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stdsim

Simulating Clumped Isotope standard statistics

https://github.com/japhir/stdsim

Science Score: 67.0%

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    CITATION.cff file
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    .zenodo.json file
    Found .zenodo.json file
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    DOI references
    Found 2 DOI reference(s) in README
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    Academic publication links
    Links to: zenodo.org
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    Scientific vocabulary similarity
    Low similarity (12.5%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

Simulating Clumped Isotope standard statistics

Basic Info
  • Host: GitHub
  • Owner: japhir
  • License: gpl-3.0
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 188 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 2
Created almost 7 years ago · Last pushed about 3 years ago
Metadata Files
Readme License Citation

README.Rmd 

---
output: github_document
---



```{r setup, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

 [![CRAN status](https://www.r-pkg.org/badges/version/stdsim)](https://cran.r-project.org/package=stdsim)
 [![DOI](https://zenodo.org/badge/204009603.svg)](https://zenodo.org/badge/latestdoi/204009603)

# stdsim

The goal of stdsim is to simulate sample and standard measurements to allow optimisation of the Empirical Transfer Function, the calibration from the machine scale of standards to an absolute reference frame.

## Installation

You can install the released version of stdsim from [GitHub](https://github.com/japhir) with:

``` r
devtools::install_github("japhir/stdsim")
```

## Example

This shows how to run one simulation with some input parameters:

```{r example}
options(genplot=TRUE, verbose=TRUE)
library(stdsim)
sim_stds(stdfreqs=c(1, 1, 9, 0, 0), stdn=50, smpn=30, stdev=25, smpt=5, out="pl")
```

# Citation

When you use this software, please also cite the article for which this R package was written:

Kocken, I. J., Müller, I. A., & Ziegler, M. (2019). Optimizing the use of carbonate standards to minimize uncertainties in clumped isotope data. Geochemistry, Geophysics, Geosystems, 20(11), 5565–5577. https://doi.org/10.1029/2019GC008545

Owner

  • Name: Ilja Kocken
  • Login: japhir
  • Kind: user
  • Location: The Netherlands
  • Company: @UtrechtUniversity

PhD Candidate in Palaeoclimate | Data Steward for Earth Sciences

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: Simulating Clumped Isotope standard statistics
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Kocken
    family-names: Ilja Japhir
    email: i.j.kocken@uu.nl
    affiliation: Utrecht University
    orcid: 'https://orcid.org/0000-0003-2196-8718'
identifiers:
  - type: doi
    value: 10.5281/zenodo.5710014
    description: Zenodo all versions
repository-code: 'https://github.com/japhir/stdsim'
repository: 'https://zenodo.org/record/5710014'
abstract: >-
  The goal of stdsim is to simulate sample and standard
  measurements to allow optimisation of the Empirical
  Transfer Function, the calibration from the machine scale
  of standards to an absolute reference frame.
keywords:
  - simulation
  - standards
  - statistics
  - clumped isotopes
license: GPL-3.0-or-later
version: v0.0.3
date-released: '2021-09-17'
references:
  - authors:
    - family-names: Kocken
      given-names: Ilja J.
    - family-names: Müller
      given-names: Inigo A.
    - family-names: Ziegler
      given-names: Martin
    type: article
    title: Optimizing the use of carbonate standards to minimize uncertainties in clumped isotope data
    journal: Geochemistry, Geophysics, Geosystems
    year: 2019
    volume: 20
    issue: 11
    pages: 5565--5577
    doi: 10.1029/2019GC008545
    issn: 1525-2027

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Dependencies

DESCRIPTION cran
  • R >= 2.10 depends
  • dplyr >= 0.8.1 imports
  • ggplot2 >= 3.2.0 imports
  • investr >= 1.4.0 imports
  • magrittr >= 1.5 imports
  • purrr >= 0.3.2 imports
  • tibble >= 2.1.3 imports
  • ggrepel >= 0.8.1 suggests
  • spelling * suggests
  • testthat * suggests
  • tictoc >= 1.0 suggests