https://github.com/cidgoh/pathogen-genomics-package
This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (7.4%) to scientific vocabulary
Keywords
Repository
This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates
Basic Info
Statistics
- Stars: 10
- Watchers: 3
- Forks: 4
- Open Issues: 5
- Releases: 31
Topics
Metadata Files
README.md
pathogen-genomics-package
This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates. It includes templates for detailing SARS-CoV-2 and Monkeypox sample contextual data, as well as draft Influenza and Wastewater specifications. More infectious disease templates will be included in the coming year. Other organizations are adopting this version of DataHarmonizer for their own data management purposes.
Getting Started
1) Go to Releases and download the latest package.
2) Unzip the package.
3) Run by loading the index.html or main.html files in your local web browser.
Select Template
The default template loaded is the "CanCOGeN Covid-19" template. To change the spreadsheet template, select the white text box to the right of Template, it always contains the name of the template currently active, or navigated to File followed by Change Template. An in-app window will appear that allows you to select from the available templates in the drop-down menu. After selecting the desired template, click Open to activate the template.
DataHarmonizer and the pathogen LinkML schemas provided here ar maintained in the https://github.com/cidgoh/DataHarmonizer/ repository.
Owner
- Name: Centre for Infectious Disease and One Health
- Login: cidgoh
- Kind: organization
- Email: contact@cidgoh.ca
- Location: Canada
- Website: www.cidgoh.ca
- Twitter: cidgoh
- Repositories: 14
- Profile: https://github.com/cidgoh
Hsiao Laboratory at Simon Fraser University
GitHub Events
Total
- Create event: 10
- Issues event: 17
- Release event: 9
- Watch event: 4
- Delete event: 1
- Issue comment event: 57
- Push event: 16
- Pull request event: 3
Last Year
- Create event: 10
- Issues event: 17
- Release event: 9
- Watch event: 4
- Delete event: 1
- Issue comment event: 57
- Push event: 16
- Pull request event: 3
Issues and Pull Requests
Last synced: 5 months ago
All Time
- Total issues: 12
- Total pull requests: 2
- Average time to close issues: 5 months
- Average time to close pull requests: 8 months
- Total issue authors: 8
- Total pull request authors: 2
- Average comments per issue: 4.58
- Average comments per pull request: 0.5
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 8
- Pull requests: 1
- Average time to close issues: about 1 month
- Average time to close pull requests: N/A
- Issue authors: 7
- Pull request authors: 1
- Average comments per issue: 5.88
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- GH-Emily (4)
- ejurga (2)
- 4jtlin (1)
- GLTOhorsman (1)
- KirstenPalmier (1)
- cmrn-rhi (1)
- cbarcl01 (1)
- taranewman (1)
Pull Request Authors
- cmrn-rhi (1)
- ejurga (1)