Science Score: 54.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 7 committers (14.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.2%) to scientific vocabulary
Repository
FathomNet Python client
Basic Info
- Host: GitHub
- Owner: fathomnet
- License: mit
- Language: Python
- Default Branch: main
- Homepage: https://fathomnet-py.readthedocs.io
- Size: 337 KB
Statistics
- Stars: 34
- Watchers: 4
- Forks: 4
- Open Issues: 6
- Releases: 19
Metadata Files
README.md
fathomnet-py
fathomnet-py is a client-side API to help scientists, researchers, and developers interact with FathomNet Database data.
```python
from fathomnet.api import boundingboxes boundingboxes.findconcepts() ['2G Robotics structured light laser', '55-gallon drum', ...] from fathomnet.api import images images.findbyconcept('Nanomia') [ AImageDTO( id=2274942, uuid='cdbfca66-284f-48ac-a36f-7b2ac2b43533', url='https://database.fathomnet.org/static/m3/framegrabs/MiniROV/images/0056/02183720.png', ... ), ... ] from fathomnet.api import taxa taxa.find_children('mbari', 'Bathochordaeus') [ Taxa(name='Bathochordaeus stygius', rank='species'), Taxa(name='Bathochordaeus charon', rank='species'), Taxa(name='Bathochordaeus mcnutti', rank='species') ] from fathomnet.api import xapikey xapikey.auth('NuCLjlNUlgHchtgDB01Sp1fABJVcWR') # your API key here AuthHeader( type='Bearer', token='eyJhbGciOiJI...' ) ```
The fathomnet-py API offers native Python interaction with the FathomNet REST API, abstracting away the underlying HTTP requests.
Installing fathomnet-py
fathomnet-py is available on PyPI:
bash
$ python -m pip install fathomnet
Examples
API Tutorial: 
FathomNet Models:
API Reference available on Read the Docs
Owner
- Name: FathomNet
- Login: fathomnet
- Kind: organization
- Location: United States of America
- Website: www.fathomnet.org
- Twitter: fathomnet
- Repositories: 4
- Profile: https://github.com/fathomnet
FathomNet is an open-source image database that can be used to train machine learning algorithms to help us understand our ocean and its inhabitants
Citation (CITATION.cff)
cff-version: 1.2.0
title: "fathomnet-py"
authors:
- family-names: Barnard
given-names: Kevin
type: software
message: "If you use this software, please cite both the article from preferred-citation and the software itself."
preferred-citation:
type: article
authors:
- family-names: Katija
given-names: Kakani
- family-names: Orenstein
given-names: Eric
- family-names: Schlining
given-names: Brian
- family-names: Lundsten
given-names: Lonny
- family-names: Barnard
given-names: Kevin
- family-names: Sainz
given-names: Giovanna
- family-names: Boulais
given-names: Oceane
- family-names: Cromwell
given-names: Megan
- family-names: Butler
given-names: Erin
- family-names: Woodward
given-names: Benjamin
- family-names: Bell
given-names: Katherine L. C.
title: "FathomNet: A global image database for enabling artificial intelligence in the ocean"
journal: "Scientific Reports"
volume: "12"
issue: "1"
year: 2022
date-released: "2022-09-23"
pages: "15914"
doi: "10.1038/s41598-022-19939-2"
url: "https://doi.org/10.1038/s41598-022-19939-2"
GitHub Events
Total
- Create event: 6
- Issues event: 3
- Release event: 4
- Watch event: 7
- Issue comment event: 2
- Push event: 24
- Fork event: 1
Last Year
- Create event: 6
- Issues event: 3
- Release event: 4
- Watch event: 7
- Issue comment event: 2
- Push event: 24
- Fork event: 1
Committers
Last synced: 8 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Kevin Barnard | k****d@m****g | 140 |
| ecor | e****n@m****g | 10 |
| semantic-release | s****e | 10 |
| github-actions | g****s@g****m | 9 |
| eor314 | e****t@u****u | 3 |
| lauravchrobak | l****k@m****g | 1 |
| Brian Schlining | b****g@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 7 months ago
All Time
- Total issues: 28
- Total pull requests: 4
- Average time to close issues: 2 months
- Average time to close pull requests: about 17 hours
- Total issue authors: 11
- Total pull request authors: 3
- Average comments per issue: 2.25
- Average comments per pull request: 0.5
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 4
- Pull requests: 0
- Average time to close issues: 8 days
- Average time to close pull requests: N/A
- Issue authors: 4
- Pull request authors: 0
- Average comments per issue: 1.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- mi2celis (6)
- kevinsbarnard (6)
- eor314 (6)
- khiyer (2)
- Kmoran1512 (2)
- joostdaniels (1)
- KahnSvaer (1)
- Sidd1609 (1)
- asw-v4 (1)
- csbrown (1)
- mbergman257 (1)
Pull Request Authors
- lauravchrobak (2)
- eor314 (2)
- hohonuuli (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 2
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Total downloads:
- pypi 128 last-month
-
Total dependent packages: 0
(may contain duplicates) -
Total dependent repositories: 1
(may contain duplicates) - Total versions: 68
- Total maintainers: 1
proxy.golang.org: github.com/fathomnet/fathomnet-py
- Documentation: https://pkg.go.dev/github.com/fathomnet/fathomnet-py#section-documentation
- License: mit
-
Latest release: v1.8.1
published 12 months ago
Rankings
pypi.org: fathomnet
fathomnet-py is a client-side API to help scientists, researchers, and developers interact with FathomNet data.
- Homepage: https://database.fathomnet.org/fathomnet/#/about
- Documentation: https://fathomnet-py.readthedocs.io
- License: MIT License
-
Latest release: 1.8.1
published 12 months ago
Rankings
Maintainers (1)
Dependencies
- coco-lib ^0.1.2
- dataclasses-json ^0.5.4
- lxml ^4.6.0
- progressbar2 ^3.37.0
- python ^3.7
- requests ^2.20.0