biochatter - v0.13.4

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.13.3...v0.13.4

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biochatter - v0.13.2

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.13.1...v0.13.2

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biochatter - v0.13.1

What's Changed

• Introduce OpenRouterConversation with Force Tool Call and Token Counting Overhaul by @fcarli in https://github.com/biocypher/biochatter/pull/304
• Bump version: 0.11.1 → 0.12.0 by @fcarli in https://github.com/biocypher/biochatter/pull/308
• Longevity benchmark by @HansJarchow in https://github.com/biocypher/biochatter/pull/293
• Bump version: 0.12.0 → 0.13.0 by @slobentanzer in https://github.com/biocypher/biochatter/pull/310
• update redirects after docs refactor by @slobentanzer in https://github.com/biocypher/biochatter/pull/311

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.11.1...v0.13.1

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biochatter - v0.13.0

What's Changed

• Introduce OpenRouterConversation with Force Tool Call and Token Counting Overhaul by @fcarli in https://github.com/biocypher/biochatter/pull/304
• Bump version: 0.11.1 → 0.12.0 by @fcarli in https://github.com/biocypher/biochatter/pull/308
• Longevity benchmark by @HansJarchow in https://github.com/biocypher/biochatter/pull/293

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.11.1...v0.13.0

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biochatter - v0.12.0

What's Changed

• Introduce OpenRouterConversation with Force Tool Call and Token Counting Overhaul by @fcarli in https://github.com/biocypher/biochatter/pull/304

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.11.1...v0.12.0

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biochatter - v0.11.1

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.11.0...v0.11.1

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biochatter - v0.10.1

What's Changed

• Tool Usage, Structured Outputs and refactoring by @fcarli in https://github.com/biocypher/biochatter/pull/298
• Improve the explaintoolresult behavior by @fcarli in https://github.com/biocypher/biochatter/pull/301

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.9.8...v0.10.1

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biochatter - v0.10.0

What's Changed

• Adding support to gemini-2.0-flash model by @fcarli in https://github.com/biocypher/biochatter/pull/276
• Added LiteLLM implementation as UnifiedConversation class in llm_connect.py by @AmanSCoder in https://github.com/biocypher/biochatter/pull/278
• Add support to structured outputs by @fcarli in https://github.com/biocypher/biochatter/pull/296

New Contributors

• @AmanSCoder made their first contribution in https://github.com/biocypher/biochatter/pull/278

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.9.8...v0.10.0

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biochatter - v0.9.8

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.9.7...v0.9.8

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biochatter - v0.9.7

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.9.6...v0.9.7

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biochatter - v0.9.6

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.9.5...v0.9.6

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biochatter - v0.9.5

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.9.4...v0.9.5

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biochatter - v0.9.4

What's Changed

• Mike-versioning by @slobentanzer in https://github.com/biocypher/biochatter/pull/299

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.9.2...v0.9.4

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biochatter - v0.9.2

What's Changed

• Adapt docs structure by @slobentanzer in https://github.com/biocypher/biochatter/pull/294

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.9.1...v0.9.2

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biochatter - v0.9.1

What's Changed

• fix table of content nesting by @slobentanzer in https://github.com/biocypher/biochatter/pull/269
• Prepare docs migration to centralised repo by @slobentanzer in https://github.com/biocypher/biochatter/pull/270
• chore: update benchmark visualizations by @github-actions in https://github.com/biocypher/biochatter/pull/271
• Fixed minor typo in the rag.md doc file by @fcarli in https://github.com/biocypher/biochatter/pull/273
• chore: update benchmark visualizations by @github-actions in https://github.com/biocypher/biochatter/pull/272
• fix: anthropic does not allow system message to appear in the middle of messages list by @fengsh27 in https://github.com/biocypher/biochatter/pull/292

New Contributors

• @github-actions made their first contribution in https://github.com/biocypher/biochatter/pull/271

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.9.0...v0.9.1

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biochatter - v0.9.0

What's Changed

• feat: add support for python API calling and scverse packages by @slobentanzer in https://github.com/biocypher/biochatter/pull/263

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.8.2...v0.9.0

With contributions from @MDLDan, @bastienchassagnol, @vd-dragan21, @anisdismail, @noahbruderer, @mengerj, @kvitoslava-yarish

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biochatter - v0.8.2

What's Changed

• remove non-number values from stats return by @slobentanzer in https://github.com/biocypher/biochatter/pull/267

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.8.1...v0.8.2

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biochatter - v0.8.1

What's Changed

• feat: protect chat attributes and improve error handling by @slobentanzer in https://github.com/biocypher/biochatter/pull/262

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.8.0...v0.8.1

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biochatter - v0.8.0

What's Changed

• feat: support to inject token usage update callback by @fengsh27 in https://github.com/biocypher/biochatter/pull/259

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.7.10...v0.8.0

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biochatter - v0.7.10

What's Changed

• Fix-blast by @slobentanzer in https://github.com/biocypher/biochatter/pull/220

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.7.9...v0.7.10

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biochatter - v0.7.9

What's Changed

• Docs update by @slobentanzer in https://github.com/biocypher/biochatter/pull/218
• Ruff by @slobentanzer in https://github.com/biocypher/biochatter/pull/219

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.7.8...v0.7.9

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biochatter - v0.7.8

What's Changed

• Biotools-API by @slobentanzer in https://github.com/biocypher/biochatter/pull/208

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.7.7...v0.7.8

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biochatter - v0.7.7

What's Changed

• Benchmark-VHP by @slobentanzer in https://github.com/biocypher/biochatter/pull/207

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.7.6...v0.7.7

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biochatter - v0.7.6

What's Changed

• Advanced-use-case by @slobentanzer in https://github.com/biocypher/biochatter/pull/199
• Custom OpenAI endpoint support by @winternewt in https://github.com/biocypher/biochatter/pull/203

New Contributors

• @winternewt made their first contribution in https://github.com/biocypher/biochatter/pull/203

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.7.5...v0.7.6

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biochatter - v0.7.5

What's Changed

• refactor(kg): modify kg query response to prompt LLM to include query statement by @fengsh27 in https://github.com/biocypher/biochatter/pull/200

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.7.4...v0.7.5

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biochatter - v0.7.4

What's Changed

• fix: Inject kg context even if kg query result is empty by @fengsh27 in https://github.com/biocypher/biochatter/pull/198

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.7.3...v0.7.4

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biochatter - v0.7.3

What's Changed

• feat: introduce use_reflexion to determine whether to use ReflexionAgent to generate Cypher query by @fengsh27 in https://github.com/biocypher/biochatter/pull/197

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.7.2...v0.7.3

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biochatter - v0.7.2

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.7.1...v0.7.2

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biochatter - v0.7.0

What's Changed

• Add models (Claude, Llama 3.1) by @slobentanzer in https://github.com/biocypher/biochatter/pull/195

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.6.4...v0.7.0

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biochatter - v0.6.4

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.6.3...v0.6.4

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biochatter - v0.6.3

What's Changed

• Docs-refactor by @slobentanzer in https://github.com/biocypher/biochatter/pull/194

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.6.2...v0.6.3

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biochatter - v0.6.2

What's Changed

• fix: resolve an vectorstore issue by @fengsh27 in https://github.com/biocypher/biochatter/pull/193

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.6.1...v0.6.2

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biochatter - v0.6.1

What's Changed

• fix: resolve some bugs in reflexion agent by @fengsh27 in https://github.com/biocypher/biochatter/pull/192

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.6.0...v0.6.1

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biochatter - v0.6.0

What's Changed

• Multimodal-benchmark by @slobentanzer in https://github.com/biocypher/biochatter/pull/184
• feat: introduce decider-agent by @fengsh27 in https://github.com/biocypher/biochatter/pull/183

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.5.1...v0.6.0

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biochatter - v0.5.1

What's Changed

• Rag api agent by @Tatan47 in https://github.com/biocypher/biochatter/pull/168
• Medical benchmark and RAG API agent by @slobentanzer in https://github.com/biocypher/biochatter/pull/181

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.5.0...v0.5.1

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biochatter - v0.5.0

What's Changed

• Rag api agent by @Tatan47 in https://github.com/biocypher/biochatter/pull/161
• [PDSM] Medical Testcases for benchmarking by @ytehran in https://github.com/biocypher/biochatter/pull/157
• feat: Introduce Langgraph Agent to KG query generation by @fengsh27 in https://github.com/biocypher/biochatter/pull/173

New Contributors

• @Tatan47 made their first contribution in https://github.com/biocypher/biochatter/pull/161
• @ytehran made their first contribution in https://github.com/biocypher/biochatter/pull/157

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.4.14...v0.5.0

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biochatter - v0.4.14

What's Changed

• Closes #174 Auto image processing for multimodal conversations by @drAbreu in https://github.com/biocypher/biochatter/pull/176

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.4.13...v0.4.14

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biochatter - v0.4.13

What's Changed

• Integration of OllamaConversation by @AndiMajore in https://github.com/biocypher/biochatter/pull/169

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.4.12...v0.4.13

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biochatter - v0.4.12

What's Changed

• Multimodal model support by @slobentanzer in https://github.com/biocypher/biochatter/pull/167

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.4.11...v0.4.12

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biochatter - v0.4.11

What's Changed

• Devdocs by @slobentanzer in https://github.com/biocypher/biochatter/pull/136
• Update README.md by @slobentanzer in https://github.com/biocypher/biochatter/pull/139
• Update Xinference and add some open source LLMs by @slobentanzer in https://github.com/biocypher/biochatter/pull/142
• add short benchmark readme by @slobentanzer in https://github.com/biocypher/biochatter/pull/143
• add a version column to the benchmark results by @slobentanzer in https://github.com/biocypher/biochatter/pull/145
• LLM Benchmarking SourceData / Text extraction by @drAbreu in https://github.com/biocypher/biochatter/pull/146
• Update podcastsingledocument.py by @eltociear in https://github.com/biocypher/biochatter/pull/156
• Custom-models by @slobentanzer in https://github.com/biocypher/biochatter/pull/162

New Contributors

• @drAbreu made their first contribution in https://github.com/biocypher/biochatter/pull/146
• @eltociear made their first contribution in https://github.com/biocypher/biochatter/pull/156

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.4.10...v0.4.11

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biochatter - v0.4.10

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.4.9...v0.4.10

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Published by github-actions[bot] almost 2 years ago

biochatter - v0.4.9

What's Changed

• fix: don't add None to entities if source or target are missing by @slobentanzer in https://github.com/biocypher/biochatter/pull/127

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.4.8...v0.4.9

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biochatter - v0.4.8

What's Changed

• Use encrypted test dataset by @nilskre in https://github.com/biocypher/biochatter/pull/123

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.4.7...v0.4.8

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biochatter - v0.4.7

What's Changed

• In chatting, return injected contexts by @fengsh27 in https://github.com/biocypher/biochatter/pull/124

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.4.6...v0.4.7

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biochatter - v0.4.6

What's Changed

• fix exception in kg query by @fengsh27 in https://github.com/biocypher/biochatter/pull/118

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.4.5...v0.4.6

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biochatter - v0.4.5

What's Changed

• Benchmark-yaml-hash by @slobentanzer in https://github.com/biocypher/biochatter/pull/111

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.4.4...v0.4.5

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biochatter - v0.4.4

What's Changed

• fix neo4j connecting issue by @fengsh27 in https://github.com/biocypher/biochatter/pull/116

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.4.3...v0.4.4

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biochatter - v0.4.3

What's Changed

• Inject conversation factory to RagAgent by @fengsh27 in https://github.com/biocypher/biochatter/pull/113

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.4.2...v0.4.3

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biochatter - v0.4.2

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.4.1...v0.4.2

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biochatter - v0.4.0

What's Changed

• Testmultiword by @slobentanzer in https://github.com/biocypher/biochatter/pull/65
• parametrize benchmark tests based on test data in csv; enable switchi… by @nilskre in https://github.com/biocypher/biochatter/pull/73
• add docstrings and improve modular structure by @nilskre in https://github.com/biocypher/biochatter/pull/88
• Rag_agent by @slobentanzer in https://github.com/biocypher/biochatter/pull/97
• issue #93: show benchmark results on docs page (first draft) by @nilskre in https://github.com/biocypher/biochatter/pull/96
• Benchmark by @slobentanzer in https://github.com/biocypher/biochatter/pull/102

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.13...v0.4.0

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biochatter - v0.3.13

What's Changed

• Reduce dependency on xinference by @fengsh27 in https://github.com/biocypher/biochatter/pull/91
• Introduce AzureOpenAIEmbeddings for Azure OpenAI server by @fengsh27 in https://github.com/biocypher/biochatter/pull/92

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.12...v0.3.13

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biochatter - v0.3.12

What's Changed

• make rag to support embedded documents workspace by @fengsh27 in https://github.com/biocypher/biochatter/pull/90

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.11...v0.3.12

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biochatter - v0.3.11

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.10...v0.3.11

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biochatter - v0.3.10

What's Changed

• update wasm conversation to return tuple .. by @slobentanzer in https://github.com/biocypher/biochatter/pull/85

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.9...v0.3.10

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biochatter - v0.3.9

What's Changed

• Cicd release generation by @nilskre in https://github.com/biocypher/biochatter/pull/69
• Add test for getting a query in SQL by @emmaver in https://github.com/biocypher/biochatter/pull/74
• Query interaction by @emmaver in https://github.com/biocypher/biochatter/pull/71
• remove docker install from CI by @slobentanzer in https://github.com/biocypher/biochatter/pull/83
• add WasmConversation as a way to communicate with .. by @slobentanzer in https://github.com/biocypher/biochatter/pull/82

New Contributors

• @nilskre made their first contribution in https://github.com/biocypher/biochatter/pull/69

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.8...v0.3.9

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biochatter - v0.3.8.dev1

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.8...v0.3.8.dev1

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biochatter - v0.3.8

What's Changed

• small fixes in prompts.py by @emmaver in https://github.com/biocypher/biochatter/pull/63
• adjustment to message appending to account for .. by @slobentanzer in https://github.com/biocypher/biochatter/pull/67

New Contributors

• @emmaver made their first contribution in https://github.com/biocypher/biochatter/pull/63

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.7...v0.3.8

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biochatter - v0.3.7

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.6...v0.3.7

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biochatter - v0.3.6

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.5...v0.3.6

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biochatter - v0.3.5

What's Changed

• Langchain-update by @slobentanzer in https://github.com/biocypher/biochatter/pull/58

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.4...v0.3.5

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biochatter - v0.3.4

What's Changed

• Documentation workflow by @slobentanzer in https://github.com/biocypher/biochatter/pull/50
• Mock OpenAI and Milvus server for testvectordatabase and testvectordata_host by @fengsh27 in https://github.com/biocypher/biochatter/pull/49

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.3...v0.3.4

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biochatter - v0.3.3

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.2...v0.3.3

- Jupyter Notebook
Published by slobentanzer about 2 years ago

biochatter - v0.3.2

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.1...v0.3.2

- Jupyter Notebook
Published by slobentanzer about 2 years ago

biochatter - v0.3.1

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.3.0...v0.3.1

- Jupyter Notebook
Published by slobentanzer about 2 years ago

biochatter - v0.3.0

What's Changed

• Integration of generic LLM API (e.g. Xinference) by @AndiMajore in https://github.com/biocypher/biochatter/pull/24

New Contributors

• @AndiMajore made their first contribution in https://github.com/biocypher/biochatter/pull/24

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.2.1...v0.3.0

- Jupyter Notebook
Published by slobentanzer about 2 years ago

biochatter - v0.2.1

What's Changed

• create ci for pull request by @fengsh27 in https://github.com/biocypher/biochatter/pull/26

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.2.0...v0.2.1

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.2.0

What's Changed

• Podcast by @slobentanzer in https://github.com/biocypher/biochatter/pull/30

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.18...v0.2.0

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.18

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.17...v0.1.18

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.17

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.16...v0.1.17

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.16

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.15...v0.1.16

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.15

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.14...v0.1.15

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.14

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.13...v0.1.14

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.13

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.12...v0.1.13

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.12

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.11...v0.1.12

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.11

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.10...v0.1.11

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.10

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.9...v0.1.10

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.9

What's Changed

• Prompts by @slobentanzer in https://github.com/biocypher/biochatter/pull/22

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.8...v0.1.9

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.8

What's Changed

• Support to similarity search across all uploaded documents and map metadata to embeddings by @fengsh27 in https://github.com/biocypher/biochatter/pull/14

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.7...v0.1.8

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.7

What's Changed

• Enable to connect to remote host by @fengsh27 in https://github.com/biocypher/biochatter/pull/11

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.6...v0.1.7

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.6

What's Changed

• make biochatter to support tokens splitter by @fengsh27 in https://github.com/biocypher/biochatter/pull/4

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.5...v0.1.6

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.5

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.4...v0.1.5

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.4

What's Changed

• Azure endpoint by @trangdata in https://github.com/biocypher/biochatter/pull/1
• Podcast by @slobentanzer in https://github.com/biocypher/biochatter/pull/2

New Contributors

• @trangdata made their first contribution in https://github.com/biocypher/biochatter/pull/1
• @slobentanzer made their first contribution in https://github.com/biocypher/biochatter/pull/2

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.3...v0.1.4

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.3

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.2...v0.1.3

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - v0.1.2

Full Changelog: https://github.com/biocypher/biochatter/compare/v0.1.1...v0.1.2

- Jupyter Notebook
Published by slobentanzer over 2 years ago

biochatter - First functional version on PyPI, including LLM connect and vector DB integration

Includes basic functionality to connect to LLM providers via API (several OpenAI models and HF Hub) and Milvus as a vector database management system.

- Jupyter Notebook
Published by slobentanzer over 2 years ago