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Recent Releases of https://github.com/clinical-genomics/crunchy

https://github.com/clinical-genomics/crunchy - Release 1.0.13

Merge pull request #37 from Clinical-Genomics/refactor-linters

Changed

  • feat(linters): Update

- Python
Published by clingen-sthlm over 1 year ago

https://github.com/clinical-genomics/crunchy - Release 1.0.12

Merge pull request #36 from Clinical-Genomics/fix-release

Changed

  • Fix release actions

- Python
Published by clingen-sthlm almost 2 years ago

https://github.com/clinical-genomics/crunchy - Release 1.0.11

Merge pull request #35 from Clinical-Genomics/update-python

Changed

  • Python update to 3.12

- Python
Published by clingen-sthlm almost 2 years ago

https://github.com/clinical-genomics/crunchy - Release 1.0.10

Merge pull request #34 from Clinical-Genomics/fix-cli-pip-install

Changed

  • Fix cli pip install

- Python
Published by clingen-sthlm almost 2 years ago

https://github.com/clinical-genomics/crunchy - Release 1.0.9

Merge pull request #33 from Clinical-Genomics/migrate-to-poetry

Changed

  • Migrate to Poetry

- Python
Published by clingen-sthlm almost 2 years ago

https://github.com/clinical-genomics/crunchy - Release 1.0.8

Merge pull request #32 from Clinical-Genomics/update-zipp

Changed

  • Update zipp

- Python
Published by clingen-sthlm almost 2 years ago

https://github.com/clinical-genomics/crunchy - Release 1.0.7

Merge pull request #31 from Clinical-Genomics/update-codeowners

Changed

  • Update Codeowners

- Python
Published by clingen-sthlm almost 2 years ago

https://github.com/clinical-genomics/crunchy - Release 1.0.6

Merge pull request #29 from Clinical-Genomics/update-setuptools

Changed

  • Update setuptools

- Python
Published by clingen-sthlm almost 2 years ago

https://github.com/clinical-genomics/crunchy - Release 1.0.5

Merge pull request #30 from Clinical-Genomics/update-pr-deployment

Changed

  • Add deployment instructions
  • Update PR template

- Python
Published by clingen-sthlm almost 2 years ago

https://github.com/clinical-genomics/crunchy - Release 1.0.4

Merge pull request #27 from Clinical-Genomics/update-lint

Add

  • Pre-commit and config
  • Black action
  • Isort

Change

  • Update Black and apply it
  • Remove flake8

- Python
Published by clingen-sthlm about 2 years ago

https://github.com/clinical-genomics/crunchy - Release 1.0.3

Merge pull request #25 from Clinical-Genomics/update_actions (patch)

Changed

  • feat(update): GitHub actions

- Python
Published by clingen-sthlm over 3 years ago

https://github.com/clinical-genomics/crunchy - Release 1.0.2

Merge pull request #24 from Clinical-Genomics/update_samtools (patch)

Added

  • Update samtools
  • Refactor code

- Python
Published by clingen-sthlm over 3 years ago

https://github.com/clinical-genomics/crunchy - Release 1.0.1

Merge pull request #23 from Clinical-Genomics/fixcodecovaction (patch)

Fixed

  • Fix actions python version syntax

- Python
Published by clingen-sthlm over 3 years ago

https://github.com/clinical-genomics/crunchy - Release 1.0.0

Merge pull request #22 from Clinical-Genomics/update_python (major)

Changes

  • Fix code smells
  • Update python
  • Update Python packages

- Python
Published by clingen-sthlm over 3 years ago

https://github.com/clinical-genomics/crunchy - Release 0.6.2

Merge pull request #21 from Clinical-Genomics/addpypiaction (patch)

Added

  • Add action to publish to pypi

- Python
Published by clingen-sthlm almost 4 years ago

https://github.com/clinical-genomics/crunchy - Release 0.6.1

Merge pull request #20 from Clinical-Genomics/addbumpversion (patch)

Added

  • Adds bump version action

Changed

  • Updated pipfile lock
  • Updates code owners
  • Removes support for python 3.6

Fix

  • Fixes actions using conda

- Python
Published by clingen-sthlm almost 4 years ago

https://github.com/clinical-genomics/crunchy - Correct integrity check

There was a problem that when running compress fastq with --check-integrity the files where checked against their own checksum. This is fixed

- Python
Published by moonso about 6 years ago

https://github.com/clinical-genomics/crunchy - Spring metadata file

[0.5]

Added

  • Option to output a metadata file for a spring archive with original fastq paths and checksums

- Python
Published by moonso about 6 years ago

https://github.com/clinical-genomics/crunchy - Integrity when unpacking spring archive

[0.4]

Added

  • Option to check the integrity when unpacking a spring archive

Changed

  • Parameter names to --first-read and --second-read in decompress CLI

- Python
Published by moonso over 6 years ago