https://github.com/clinical-genomics/meatballs

An open source recipe book from the awesome staff of Clinical Genomics

https://github.com/clinical-genomics/meatballs

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Committers with academic emails
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (12.2%) to scientific vocabulary

Keywords from Contributors

bioconda coverage genomics sambamba
Last synced: 11 months ago · JSON representation

Repository

An open source recipe book from the awesome staff of Clinical Genomics

Basic Info
  • Host: GitHub
  • Owner: Clinical-Genomics
  • License: mit
  • Language: Python
  • Default Branch: master
  • Size: 20 MB
Statistics
  • Stars: 2
  • Watchers: 2
  • Forks: 1
  • Open Issues: 30
  • Releases: 44
Created over 4 years ago · Last pushed about 1 year ago
Metadata Files
Readme License

README.md

meatballs

An open source recipe book from the awesome staff of Clinical Genomics. Link to the available recipes: https://clinical-genomics.github.io/meatballs/

image

This repository is created as GitHub playground for the group workshop in Sigtuna (28-29 Oct 2021).

We hope that it will be a fun way to learn how to use GitHub for opening and reviewing pull requests!

Run meatballs on your computer using Docker

Requires git software installed (https://github.com/git-guides/install-git). If you have Docker installed on your computer you could run meatballs locally using the following commands

Howto: - Clone this repository to your computer with the following command: git clone https://github.com/Clinical-Genomics/meatballs.git

  • Move your working directory in the cloned repository folder: cd meatballs

  • Build and run the Docker image: docker build -t meatballs .

  • Run the image: docker run --rm -p 8080:8080 meatballs

You could now browse the content of meatballs using the url: http://0.0.0.0:8080/ in a browser of your choice.

Submit a recipe

Looking to submit a recipe? Follow these instructions:

Open a pull request with the recipe you wish to add

The content of your recipe should be included in the docs folder of this repository. Make sure your recipe is created in the right category (appetizers, main_courses, desserts, drinks ..?). The text should be formatted in markdown.

To create a pull request you could either: - Create a new branch containing the changes on your computer and then push it to this repository to open the pull request - Use the GitHub web-based editor to add changes and open a pull request

A simple guide on how to open a general pull request in GitHub can be found here. Keep in mind that this is the usual way to work with pull requests, but it requires basic usage of the terminal.

A guide on how to create a pull request using the GitHub web editor is present here

Previewing the contents using mkdocs serve

This option is only available if you have the repository installed locally. You could preview the content of the docs folder by running: mkdocs serve

Owner

  • Name: Clinical Genomics
  • Login: Clinical-Genomics
  • Kind: organization
  • Location: Stockholm, Sweden

GitHub Events

Total
  • Push event: 1
  • Create event: 2
Last Year
  • Push event: 1
  • Create event: 2

Committers

Last synced: 12 months ago

All Time
  • Total Commits: 149
  • Total Committers: 26
  • Avg Commits per committer: 5.731
  • Development Distribution Score (DDS): 0.705
Past Year
  • Commits: 12
  • Committers: 2
  • Avg Commits per committer: 6.0
  • Development Distribution Score (DDS): 0.417
Top Committers
Name Email Commits
Clinical Genomics Bot c****m@g****m 44
Chiara Rasi r****a@g****m 29
Anna Leinfelt 3****t 22
Patrik Grenfeldt p****t@s****e 7
Rasmus Burge 8****G 6
Anders Jemt j****n 4
ashwini06 a****6 4
Cecilia Svensson 3****e 3
Mei Wu p****d 3
amandaraud 9****d 3
Chiara Rasi r****a@g****m 2
AbiDalby 1****y 2
Anna Lyander 3****m 2
EmiliaRegazzoni 9****i 2
Ida Lindegaard 8****d 2
Zaldar123 1****3 2
ivadym v****k@s****e 2
Valtteri Wirta v****a@s****e 2
Carolina Diettrich 1****h 1
Elin Wicksell 1****i 1
Emma Sernstad e****d@s****e 1
Karl-Svard 6****d 1
Mropat m****t@g****m 1
Vincent Janvid 6****v 1
idaisac 9****c 1
Joel Gruselius j****s@s****e 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 12 months ago

All Time
  • Total issues: 12
  • Total pull requests: 116
  • Average time to close issues: about 2 months
  • Average time to close pull requests: about 2 months
  • Total issue authors: 2
  • Total pull request authors: 42
  • Average comments per issue: 0.83
  • Average comments per pull request: 0.33
  • Merged pull requests: 67
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 37
  • Average time to close issues: N/A
  • Average time to close pull requests: about 4 hours
  • Issue authors: 0
  • Pull request authors: 5
  • Average comments per issue: 0
  • Average comments per pull request: 0.05
  • Merged pull requests: 25
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • northwestwitch (9)
  • RasmusBurge-CG (1)
Pull Request Authors
  • AnnaLeinfelt (18)
  • northwestwitch (9)
  • RasmusBurge-CG (6)
  • EmiliaRegazzoni (5)
  • jgruselius (4)
  • annaengstrom (3)
  • jemten (3)
  • talnor (2)
  • vwirta (2)
  • ivadym (2)
  • Mropat (2)
  • AbiDalby (2)
  • idalindegaard (2)
  • moahaegglund (1)
  • sofstam (1)
Top Labels
Issue Labels
Bug (4) Documentation (1) Effort S (1) Gain L (1)
Pull Request Labels
Bug (1)

Dependencies

.github/workflows/auto-deploy-docs.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
.github/workflows/merge_master_ci.yml actions
  • Clinical-Genomics/bump2version-ci v3 composite
Dockerfile docker
  • python 3.8-slim build
requirements.txt pypi
  • markdown-include *
  • md-tooltips *
  • mkdocs *
  • mkdocs-material *
setup.py pypi