https://github.com/clinical-genomics-umea/tbe_analysis
Science Score: 13.0%
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○Academic publication links
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○Scientific vocabulary similarity
Low similarity (2.5%) to scientific vocabulary
Last synced: 9 months ago
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JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: Clinical-Genomics-Umea
- Language: Python
- Default Branch: main
- Size: 48.8 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Created almost 3 years ago
· Last pushed almost 3 years ago
Metadata Files
Readme
README.md
TBE_analysis
Analysis of TBE virus from nanopore sequencing
Quick start:
Build singularity image:
console
sudo singularity build singularity/tbe_image.sif singularity/tbe_container.def
Run pipeline
console
singularity exec tbe_image.sif snakemake -c <CORES> -s Snakefile.py
Log
230816
Started the repo
metaFlye does only produce contigs about 3000 in length.
tried Raven, but that has a minimum contig of 10k
canu doesnt work either...
map the reads to the NC_001672 genome to see how the pcr tiling went
Owner
- Name: Clinical-Genomics-Umea
- Login: Clinical-Genomics-Umea
- Kind: organization
- Repositories: 1
- Profile: https://github.com/Clinical-Genomics-Umea