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Recent Releases of bgcflow_wrapper

bgcflow_wrapper - v0.5.0

What's Changed

  • Upgrade Snakemake to v8.25.5 @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/45
  • Feat: Add bgcflow run --antismash_mode to enable use fungi version using BGCFlow environment variables @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/45
  • Fix: Security updates @dependabot in https://github.com/NBChub/bgcflowwrapper/pull/44 @dependabot in https://github.com/NBChub/bgcflowwrapper/pull/46

Full Changelog: https://github.com/NBChub/bgcflow_wrapper/compare/v0.4.0...v0.5.0

- Python
Published by matinnuhamunada over 1 year ago

bgcflow_wrapper - v0.4.0

What's Changed

  • Upgrade to Snakemake v8.11.3 by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/42
  • Fix: Improve get-result command to be more intuitive
  • Docs: Update citation

Full Changelog: https://github.com/NBChub/bgcflow_wrapper/compare/v0.3.5...v0.4.0

- Python
Published by matinnuhamunada almost 2 years ago

bgcflow_wrapper - v0.3.5

What's Changed

  • v0.3.5 - Snakemake fix and security update by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/39
  • fix: Pin pulp version to 2.7.0 to address snakemake dependency issue: https://github.com/snakemake/snakemake/issues/2606
  • feat: add --profile parameters on bgcflow run to use snakemake profiles
  • chore(deps): bump pip from 22.3.1 to 23.3 by @dependabot in https://github.com/NBChub/bgcflow_wrapper/pull/40

Full Changelog: https://github.com/NBChub/bgcflow_wrapper/compare/v0.3.4...v0.3.5

- Python
Published by matinnuhamunada over 2 years ago

bgcflow_wrapper - v0.3.4

What's Changed

  • Synchronize with BGCFlow version 0.7.9
  • feat: add CLI option for lsabgc and ppanggolin by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/37
  • chore: Auto detect available CPU
  • feat: give option to turn off panoptes

Full Changelog: https://github.com/NBChub/bgcflow_wrapper/compare/v0.3.3...v0.3.4

- Python
Published by matinnuhamunada over 2 years ago

bgcflow_wrapper - v0.3.3

What's Changed

  • fix: pin snakemake to v7.31.1 for compatibility with panoptes-ui job monitoring by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/35
  • chore: security updates by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/35

Full Changelog: https://github.com/NBChub/bgcflow_wrapper/compare/v0.3.2...v0.3.3

- Python
Published by matinnuhamunada over 2 years ago

bgcflow_wrapper - v0.3.2

What's Changed

  • Downgrade pandas by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/29
  • chore(deps): bump urllib3 from 2.0.5 to 2.0.6 by @dependabot in https://github.com/NBChub/bgcflow_wrapper/pull/31
  • chore(deps): bump cryptography from 41.0.3 to 41.0.4 by @dependabot in https://github.com/NBChub/bgcflow_wrapper/pull/30

New Contributors

  • @dependabot made their first contribution in https://github.com/NBChub/bgcflow_wrapper/pull/31

Full Changelog: https://github.com/NBChub/bgcflow_wrapper/compare/v0.3.1...v0.3.2

- Python
Published by matinnuhamunada over 2 years ago

bgcflow_wrapper - v0.3.1

What's Changed

  • Dev 0.3.1 by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/28
  • Read project metadata to decide if there are some dbt models to be excuded for synchronisation
  • User can also manually define which dbt models to exclude

Full Changelog: https://github.com/NBChub/bgcflow_wrapper/compare/v0.3.0...v0.3.1

- Python
Published by matinnuhamunada almost 3 years ago

bgcflow_wrapper - v0.3.0

What's Changed

  • docs: refer to wiki for tutorial by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/26
  • feat: -use metabase API and dbt-metabase to upload duckdb and sync model relationships by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/27

Full Changelog: https://github.com/NBChub/bgcflow_wrapper/compare/v0.2.8...v0.3.0

- Python
Published by matinnuhamunada almost 3 years ago

bgcflow_wrapper - v0.2.8

What's Changed

  • Dev 0.2.8 by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/25
  • Improvement on mkdocs report handling and dependencies
  • Utilize BGCFlow v0.7.2 version dependencies metadata
  • bgcflow init will now copy examples instead of referring links to the example folder

Full Changelog: https://github.com/NBChub/bgcflow_wrapper/compare/v0.2.7...v0.2.8

- Python
Published by matinnuhamunada almost 3 years ago

bgcflow_wrapper - v0.2.7

What's Changed

  • Dev 0.2.7 by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/24

  • New feature: organise report by subcategory

Full Changelog: https://github.com/NBChub/bgcflow_wrapper/compare/v0.2.6...v0.2.7

- Python
Published by matinnuhamunada almost 3 years ago

bgcflow_wrapper -

What's Changed

  • Release 0.2.6 by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/23

  • Security update

  • Correct tox path for linting

  • CLI improvement

  • Test improvement

  • New feature: panoptes wrapper, subworkflows, snakemake --until and --unlock

Full Changelog: https://github.com/NBChub/bgcflow_wrapper/compare/v0.2.5...v0.2.6

- Python
Published by matinnuhamunada almost 3 years ago

bgcflow_wrapper - v0.2.5

What's Changed

  • Dev v0.2.4 by @OmkarSaMo in https://github.com/NBChub/bgcflow_wrapper/pull/19
  • fix: correct alias parsing to accomodate bgcflow v0.7.0 by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/20
  • chore: security update by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/21

New Contributors

  • @OmkarSaMo made their first contribution in https://github.com/NBChub/bgcflow_wrapper/pull/19

Full Changelog: https://github.com/NBChub/bgcflow_wrapper/compare/v0.2.4...v0.2.5

- Python
Published by matinnuhamunada almost 3 years ago

bgcflow_wrapper - v0.2.4

What's Changed

  • Dev 0.2.4 - Update dependencies by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/17
  • V0.2.4 by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/18

Full Changelog: https://github.com/NBChub/bgcflow_wrapper/compare/v0.2.3...v0.2.4

- Python
Published by matinnuhamunada almost 3 years ago

bgcflow_wrapper - v0.2.3

This release is compatible with BGCFlow version 0.6.1 and version 0.6.2

What's Changed

  • fix: correct UnicodeEncodeError in Windows by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/7
  • docs: add graphical abstract by @matinnuhamunada in https://github.com/NBChub/bgcflow_wrapper/pull/16

Full Changelog: https://github.com/NBChub/bgcflow_wrapper/compare/v0.2.2-alpha...v0.2.3

- Python
Published by matinnuhamunada about 3 years ago

bgcflow_wrapper - Pre-release with BGCFlow 0.6.0

Pre-release with BGCFlow 0.6.0

- Python
Published by matinnuhamunada over 3 years ago

bgcflow_wrapper - Release v0.2.1-alpha

- Python
Published by github-actions[bot] over 3 years ago