Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/cmadan/mridataviz

Supplementary to "Data visualization for inference in tomographic brain imaging"

https://github.com/cmadan/mridataviz

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: arxiv.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.2%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Supplementary to "Data visualization for inference in tomographic brain imaging"

Basic Info
  • Host: GitHub
  • Owner: cMadan
  • Default Branch: master
  • Homepage:
  • Size: 2.93 KB
Statistics
  • Stars: 10
  • Watchers: 3
  • Forks: 2
  • Open Issues: 0
  • Releases: 0
Created over 9 years ago · Last pushed almost 7 years ago
Metadata Files
Readme

README.md

MRIdataviz

Supplementary to Pernet, C. R., & Madan, C. R. (in press). Data visualization for inference in tomographic brain imaging. European Journal of Neuroscience. doi: 10.1111/ejn.14430

Visualization

2D

ICBM 152 Nonlinear atlases version 2009

http://www.bic.mni.mcgill.ca/ServicesAtlases/ICBM152NLin2009

xjView

http://www.alivelearn.net/xjview/

bspmview

http://www.bobspunt.com/bspmview/

nanslice

https://github.com/spinicist/nanslice

3D

mni2fs

https://github.com/dprice80/mni2fs

pySurfer

https://Pysurfer.github.io

Pycortex

https://github.com/gallantlab/pycortex

BrainBrowser

https://brainbrowser.cbrain.mcgill.ca

BrainNetBrowser

https://www.nitrc.org/projects/bnv/

ITK-SNAP

http://www.itksnap.org/

MRIcro, MRIcron, MRIcroGL, MRIcroS, Surf Ice

http://www.mccauslandcenter.sc.edu/crnl/tools

Interpretation

Shed

http://upenncmroi.wpengine.com/shed/

Color Palettes

Recommended Reading

https://mycarta.wordpress.com/2012/05/29/the-rainbow-is-dead-long-live-the-rainbow-series-outline/

cmocean

https://github.com/matplotlib/cmocean

http://www.mathworks.com/matlabcentral/fileexchange/57773-cmocean-perceptually-uniform-colormaps

http://matplotlib.org/cmocean/

Brewer

http://colorbrewer2.org

https://github.com/DrosteEffect/BrewerMap

https://www.mathworks.com/matlabcentral/fileexchange/45208-colorbrewer--attractive-and-distinctive-colormaps

http://www.mathworks.com/matlabcentral/fileexchange/30564-othercolor

mpl colormaps (viridis)

http://bids.github.io/colormap/

https://www.mathworks.com/matlabcentral/fileexchange/51986-perceptually-uniform-colormaps

https://cran.r-project.org/web/packages/viridis/vignettes/intro-to-viridis.html

https://www.youtube.com/watch?v=xAoljeRJ3lU

CET (Centre for Exporation Targeting)

http://peterkovesi.com/projects/colourmaps/

http://peterkovesi.com/MatlabFns/

https://github.com/bokeh/colorcet

https://arxiv.org/abs/1509.03700

pmkmp

https://www.mathworks.com/matlabcentral/fileexchange/28982-perceptually-improved-colormaps

https://github.com/mycarta/PMKMP

https://mycarta.wordpress.com/2013/03/06/perceptual-rainbow-palette-the-goodies/

https://mycarta.wordpress.com/2012/05/29/the-rainbow-is-dead-long-live-the-rainbow-series-outline/

bipolar

http://www.mathworks.com/matlabcentral/fileexchange/26026-bipolar-colormap

cubehelix

https://www.mrao.cam.ac.uk/~dag/CUBEHELIX/

http://www.mathworks.com/matlabcentral/fileexchange/43700-cubehelix-colormaps--beautiful--distinct--versatile-

Light & Bartlein

http://www.mathworks.com/matlabcentral/fileexchange/17555-light-bartlein-color-maps

Haxby

https://www.mathworks.com/matlabcentral/fileexchange/25690-haxby-color-map

Owner

  • Name: Christopher Madan
  • Login: cMadan
  • Kind: user
  • Company: University of Nottingham

Assistant Professor in Psychology

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