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disruptive-papers-fetal-surgery

Python code for disruptive papers in fetal surgery project

https://github.com/marijane/disruptive-papers-fetal-surgery

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.3%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

Python code for disruptive papers in fetal surgery project

Basic Info
  • Host: GitHub
  • Owner: marijane
  • License: agpl-3.0
  • Language: Jupyter Notebook
  • Default Branch: main
  • Size: 634 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 1 year ago · Last pushed about 1 year ago
Metadata Files
Readme License Citation

README.md

DOI

Description

This project takes as input one or more PubMed CSV exports, placed in the data/pubmed/results/ directory. It adds useful columns to the CSV file, maps the PubMed IDs to Microsoft Academic Graph IDs, uses the MAGIDs to look up citation and disruption data from Wu et al., 2023 to score each article, and saves the scored output to a styled Excel spreadsheet.

PubMed Search Documentation and Replication

The searches used to create the PubMed CSV exports are documented in DisruptivePapersFetalSurgery-PubMedSearchDocumentation-202303.xlsx. They cover Congenital Diaphragmatic Hernia (CDH), Congenital Pulmonary Airway Malfunction (CPAM), Neural Tube Defects (NTD), and Twin-to-Twin Transfusion Syndrome (TTTS), with each search documented on a separate spreadsheet tab.

The searches can be replicated by either copying and pasting the full search string from each spreadsheet tab into PubMed or clicking on the number in the Results column. Once replicated, the search results can be exported to CSV via the Save button. Select All results and CSV format, then click Create file. Re-running the searches should not be necessary unless the Small Teams group releases an update to the disruption dataset, which was last updated in 2021.

References

Wu, L., Wang, D., & Evans, J. (2023). Replication Data for: Large teams develop and small teams disrupt science and technology [Data set]. Harvard Dataverse. https://doi.org/10.7910/DVN/JPWNNK

Owner

  • Name: marijane white
  • Login: marijane
  • Kind: user
  • Location: Portland, OR
  • Company: @OHSU-Library

Data and Research Engagement Librarian, Assistant Professor

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
  - family-names: White
    given-names: Marijane
    orcid: https://orcid.org/0000-0001-5059-4132
title: "Jupyter Notebook code for Disruptive Papers in Fetal Surgery"
version: v1.0.0
identifiers:
  - type: doi
    value: 10.5281/zenodo.14630327
date-released: 2025-01-10
url: https://github.com/marijane/disruptive-papers-fetal-surgery

GitHub Events

Total
  • Release event: 8
  • Delete event: 4
  • Push event: 9
  • Create event: 8
Last Year
  • Release event: 8
  • Delete event: 4
  • Push event: 9
  • Create event: 8

Dependencies

requirements.txt pypi
  • Pygments ==2.19.1
  • appnope ==0.1.4
  • asttokens ==3.0.0
  • attrs ==24.3.0
  • certifi ==2024.12.14
  • charset-normalizer ==3.4.1
  • colour ==0.1.5
  • comm ==0.2.2
  • debugpy ==1.8.11
  • decorator ==5.1.1
  • et_xmlfile ==2.0.0
  • executing ==2.1.0
  • idna ==3.10
  • ipykernel ==6.29.5
  • ipython ==8.31.0
  • ipywidgets ==8.1.5
  • jedi ==0.19.2
  • jsonschema ==4.23.0
  • jsonschema-specifications ==2024.10.1
  • jupyter_client ==8.6.3
  • jupyter_core ==5.7.2
  • jupyterlab_widgets ==3.0.13
  • matplotlib-inline ==0.1.7
  • nest-asyncio ==1.6.0
  • numpy ==2.2.1
  • openpyxl ==3.1.5
  • packaging ==24.2
  • pandas ==2.2.3
  • parso ==0.8.4
  • pexpect ==4.9.0
  • platformdirs ==4.3.6
  • prompt_toolkit ==3.0.48
  • psutil ==6.1.1
  • ptyprocess ==0.7.0
  • pure_eval ==0.2.3
  • python-dateutil ==2.9.0.post0
  • pytz ==2024.2
  • pyzmq ==26.2.0
  • referencing ==0.35.1
  • requests ==2.32.3
  • rpds-py ==0.22.3
  • six ==1.17.0
  • stack-data ==0.6.3
  • styleframe ==4.2
  • tornado ==6.4.2
  • tqdm ==4.67.1
  • traitlets ==5.14.3
  • tzdata ==2024.2
  • urllib3 ==2.3.0
  • wcwidth ==0.2.13
  • widgetsnbextension ==4.0.13