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samplecore

Sampling Strategies for Constructing Core Collections

https://github.com/aravind-j/samplecore

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 5 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.9%) to scientific vocabulary

Keywords

core-collections genebank germplasm pgr plant-genetic-resources r
Last synced: 9 months ago · JSON representation ·

Repository

Sampling Strategies for Constructing Core Collections

Basic Info
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
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Topics
core-collections genebank germplasm pgr plant-genetic-resources r
Created about 1 year ago · Last pushed about 1 year ago
Metadata Files
Readme Citation Codemeta

README.Rmd 

---
output: rmarkdown::github_document
always_allow_html: true
---

```{r, echo = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "",
  fig.path =  "man/figures/README-"
)
```



## `SampleCore`: Sampling Strategies for Constructing Core Collections


```{r,echo = FALSE, message = FALSE}
devtools::load_all(".", quiet = TRUE) # quiet = T for hiding macOS compiler warnings

```

###### Version : [`r getNamespaceVersion("SampleCore")`](https://aravind-j.github.io/SampleCore/); License: [GPL-2|GPL-3](https://www.r-project.org/Licenses/)

##### Aravind, J. and Suman Roy

Division of Germplasm Conservation, ICAR-National Bureau of Plant Genetic Resources, New Delhi.

***
[![minimal R version](https://img.shields.io/badge/R>%3D-3.5.0-6666ff.svg?logo=R)](https://cran.r-project.org/)
[![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)



[![Github Code Size](https://img.shields.io/github/languages/code-size/aravind-j/SampleCore.svg)](https://github.com/aravind-j/SampleCore)

[![Project Status: WIP](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
[![lifecycle](https://lifecycle.r-lib.org/articles/figures/lifecycle-maturing.svg)](https://lifecycle.r-lib.org/articles/stages.html#maturing)
[![Last-changedate](https://img.shields.io/badge/last%20change-`r gsub('-', '--', Sys.Date())`-yellowgreen.svg)](https://github.com/aravind-j/SampleCore/)

[![Website - pkgdown](https://img.shields.io/website-up-down-green-red/https/aravind-j.github.io/SampleCore.svg)](https://aravind-j.github.io/SampleCore/)






***

## Description

`r gsub("\\n", "", pkgdown:::linkify(packageDescription("SampleCore", fields = "Description")))`

## Installation


The development version can be installed from github as follows:

```{r, eval=FALSE}
# Install development version from Github
devtools::install_github("aravind-j/SampleCore")
```



## What's new
To know whats new in this version type:

```{r, eval=FALSE}
news(package='SampleCore')
```

## Links



[Github page](https://github.com/aravind-j/SampleCore)

[Documentation website](https://aravind-j.github.io/SampleCore/)





## Citing `SampleCore`
To cite the methods in the package use:

```{r, eval = FALSE}
citation("SampleCore")
```

```{r, echo = FALSE}
detach("package:SampleCore", unload = TRUE)
suppressPackageStartupMessages(library(SampleCore))
cit <- citation("SampleCore")
# yr <- format(Sys.Date(), "%Y")
# cit[1]$year <- yr
# oc <- class(cit)
# 
# cit <- unclass(cit)
# attr(cit[[1]],"textVersion") <- gsub("\\(\\)",
#                                      paste("\\(", yr, "\\)", sep = ""),
#                                      attr(cit[[1]],"textVersion"))
# class(cit) <- oc
cit
```

Owner

  • Name: J. Aravind
  • Login: aravind-j
  • Kind: user
  • Location: New Delhi, India

Scientist, Division of Germplasm Conservation, ICAR-National Bureau of Plant Genetic Resources

Citation (CITATION.cff) 

# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "SampleCore" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'SampleCore: Sampling Strategies for Constructing Core COllections'
version: 0.0.0.9000
abstract: Implements several sampling strategies for construction of core collections.
  These include 1) Stratified sampling based on group size 2) Stratified sampling
  based on group diversity 3) Sampling based on genetic distance between accessions.
  See the vignette for more, including full list of citations for the methods implemented.
authors:
- family-names: Aravind
  given-names: J.
  email: j.aravind@icar.gov.in
  orcid: https://orcid.org/0000-0002-4791-442X
- family-names: Roy
  given-names: Suman
  email: suman.roy@icar.gov.in
  orcid: https://orcid.org/0000-0001-5612-8415
repository-code: https://github.com/aravind-j/SampleCore
url: https://aravind-j.github.io/SampleCore/
contact:
- family-names: Aravind
  given-names: J.
  email: j.aravind@icar.gov.in
  orcid: https://orcid.org/0000-0002-4791-442X
- family-names: Roy
  given-names: Suman
  email: suman.roy@icar.gov.in
  orcid: https://orcid.org/0000-0001-5612-8415

CodeMeta (codemeta.json) 

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  "name": "SampleCore: Sampling Strategies for Constructing Core COllections",
  "relatedLink": "https://aravind-j.github.io/SampleCore/",
  "codeRepository": "https://github.com/aravind-j/SampleCore",
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}

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