namematch
Tool for probabilistically linking the records of individual entities (e.g. people) within and across datasets
Science Score: 54.0%
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Repository
Tool for probabilistically linking the records of individual entities (e.g. people) within and across datasets
Basic Info
- Host: GitHub
- Owner: urban-labs
- License: agpl-3.0
- Language: Python
- Default Branch: main
- Size: 10.2 MB
Statistics
- Stars: 117
- Watchers: 4
- Forks: 4
- Open Issues: 4
- Releases: 1
Metadata Files
README.md
Name Match
About the Project
Tool for probabilistically linking the records of individual entities (e.g. people) within and across datasets.
The code was originally developed for linking records in criminal justice-related datasets (arrests, victimizations, city programs, school records, etc.) using at least first name, last name, date of birth, and age (some missingness in DOB and age is tolerated). If available, other data fields like middle initial, race, gender, address, and zipcode can be included to strengthen the quality of the match.
Project Link: https://urban-labs.github.io/namematch/
Getting Started
Installation
pip install namematch
Name Match has been tested using Python 3.7 and 3.8, on both linux and Windows systems. Note, Name Match will not currently work using Python 3.9 on Windows because of the dependency on NMSLIB.
Reference
Requirements of the input data
Name Match links records by learning a supervised machine learning model that is then used to predict the likelihood that two records "match" (refer to the same person or entity). To build this model the algorithm needs training data with ground-truth "match" or "non-match" labels. In other words, it needs a way of generating a set of record pairs where it knows whether or not the records should be linked. Fortunately, if a subset of the records being input into Name Match already have a unique identifier like Social Securuity Number (SSN) or Fingerprint ID, Name Match is able to generate the training data it needs.
To see an example of this, say you are linking two datasets: dataset A and dataset B. People in dataset A can show up multiple times and can be uniquely identified via SSN. People in dataset B cannot be uniquely identified by any existing data field (hence the reason for using Name Match). If John (SSN 123) has two records in dataset A, we have found an example of two records that we know are a match. If Jane (SSN 456) also has a record in dataset A, we have found an example of two records that we know are NOT a match (Jane's record and either of John's records). Already we are on our way to building a training dataset for the Name Match model to learn from.
To facilitate the above process and make using Name Match possible, a portion of the input data must meet the following criteria: * Already have a unique person or entity identifier that can be used to link records (e.g. SSN or Fingerprint ID) * Be granular enough that some people or entities appear multiple times (e.g. the same person being arrested two or three times) * Contain inconsistencies in identifying fields like name and date of birth (e.g. arrested once as John Browne and once as Jonathan Brown)
Usage
Package usage
```python config = {
'data_files': {
'datasetA': {
'filepath' : '../preprocessed_data/datasetA.csv',
'record_id_col' : 'record_id'
},
'datasetB': {
'filepath' : '../preprocessed_data/datasetB.csv',
'record_id_col' : 'record_num'
}
},
'variables': [
{
'name' : 'first_name',
'compare_type' : 'String',
'datasetA' : 'first_name',
'datasetB' : 'fname',
}, {
'name' : 'last_name',
'compare_type' : 'String',
'datasetA' : 'last_name',
'datasetB' : 'lname',
}, {
'name' : 'dob',
'compare_type' : 'Date',
'datasetA' : 'date_of_birth',
'datasetB' : 'dob',
}, {
'name' : 'social_security_number',
'compare_type' : 'UniqueID',
'datasetA' : 'ssn',
'datasetB' : ''
}
]
}
nm = NameMatcher(config=config) nm.run() ```
See examples/end_to_end_tutorial.ipynb or examples/python_usage/link_data.py for a full runnable example.
Command line tool usage
cd examples/command_line_usage/
namematch --config-file=config.yaml --output-dir=nm_output --cluster-constraints-file=constraints.py run
For more details, please checkout examples/command_line_usage/README.md.
Roadmap
See the open issues for a list of proposed features (and known issues).
Contributing
All contributions -- to code, documentation, tests, examples, etc. -- are greatly appreciated. For more detailed information, see CONTRIBUTING.md. 1. Fork the project 2. Create your feature branch (git checkout -b some-feature) 3. Commit your changes (git commit -m 'Add some amazing feature') 4. Push to the branch (git push origin some-feature) 5. Open a pull request
License
Distributed under the GNU Affero General Public License v3.0 license. See LICENSE for more information.
Team
Melissa McNeill, UChicago Crime and Education Labs
Eddie Tzu-Yun Lin, UChicago Crime and Education Labs
Zubin Jelveh, University of Maryland
Citation
If you use Name Match in an academic work, please give this citation:
Zubin Jelveh, Melissa McNeill, and Tzu-Yun Lin. 2022. Name Match. https://github.com/urban-labs/namematch.
Citation (citation.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: Name Match
message: >-
If you use Name Match in an academic work, please
give this citation:
type: software
authors:
- given-names: Zubin
family-names: Jelveh
- given-names: Melissa
family-names: McNeill
- given-names: Tzu-Yun
family-names: Lin
identifiers:
- type: url
value: 'https://github.com/urban-labs/namematch'
description: Github Project URL
repository-code: 'https://github.com/urban-labs/namematch'
url: 'https://github.com/urban-labs/namematch'
repository-artifact: 'https://pypi.org/project/namematch/'
abstract: >-
Tool for probabilistically linking the records of
individual entities (e.g. people) within and across
datasets.
The code was originally developed for linking
records in criminal justice-related datasets
(arrests, victimizations, city programs, school
records, etc.) using at least first name, last
name, date of birth, and age (some missingness in
DOB and age is tolerated). If available, other data
fields like middle initial, race, gender, address,
and zipcode can be included to strengthen the
quality of the match.
Project Link:
https://urban-labs.github.io/namematch/
license: AGPL-3.0-only
GitHub Events
Total
- Issues event: 2
- Watch event: 2
- Issue comment event: 1
- Push event: 2
- Pull request event: 1
- Pull request review comment event: 1
- Pull request review event: 2
- Fork event: 1
Last Year
- Issues event: 2
- Watch event: 2
- Issue comment event: 1
- Push event: 2
- Pull request event: 1
- Pull request review comment event: 1
- Pull request review event: 2
- Fork event: 1
Committers
Last synced: about 3 years ago
All Time
- Total Commits: 33
- Total Committers: 3
- Avg Commits per committer: 11.0
- Development Distribution Score (DDS): 0.303
Top Committers
| Name | Commits | |
|---|---|---|
| Eddie Lin | t****n@g****m | 23 |
| Melissa McNeill | m****3@g****m | 6 |
| zjelveh | z****h@u****u | 4 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 7 months ago
All Time
- Total issues: 5
- Total pull requests: 15
- Average time to close issues: 8 months
- Average time to close pull requests: about 1 month
- Total issue authors: 3
- Total pull request authors: 4
- Average comments per issue: 0.0
- Average comments per pull request: 0.4
- Merged pull requests: 14
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 2
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- tweddielin (3)
- mmcneill (1)
- teddythepooh (1)
Pull Request Authors
- tweddielin (12)
- mmcneill (2)
- jameshowison (1)
- zjelveh (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- pypi 22 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 2
- Total maintainers: 2
pypi.org: namematch
Tool for probabilistically linking the records of individual entities (e.g. people) within and across datasets
- Homepage: https://github.com/urban-labs/namematch
- Documentation: https://urban-labs.github.io/namematch/
- License: AGPL-3.0
-
Latest release: 1.2.1
published over 3 years ago
Rankings
Maintainers (2)
Dependencies
- karma_sphinx_theme * development
- pytest * development
- pytest-cov * development
- sphinx * development
- sphinx-autobuild * development
- Dickens >=1.0.1
- Fuzzy ==1.2.2
- NameProbability 03de54f8d964e3d74accb39e7089bcac345beffb
- argcmdr >=0.7.0
- coloredlogs ==14.0
- editdistance ==0.6.0
- ipykernel ==6.16.0
- ipywidgets *
- jellyfish ==0.8.9
- line_profiler ==3.3.1
- memory_profiler fdf4488ffe42c588bfa632537e9a959e4b36bf83
- nbconvert ==6.5.2
- networkx ==2.6.3
- nmslib >=2.1.1,<2.2
- numpy >=1.20.1
- pandas ==1.3.4
- papermill ==2.4.0
- pyarrow ==7.0.0
- pyjarowinkler ==1.8
- python-levenshtein ==0.12.2
- pyyaml ==5.1
- ruamel.yaml ==0.17.17
- scikit-learn ==1.0.1
- street-address ==0.4.0
- actions/checkout v3 composite
- actions/configure-pages v2 composite
- actions/deploy-pages v1 composite
- actions/upload-pages-artifact v1 composite