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https://github.com/cnag-biomedical-informatics/convert-pheno-ui

The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data

https://github.com/cnag-biomedical-informatics/convert-pheno-ui

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
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    Academic publication links
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    Academic email domains
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  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.7%) to scientific vocabulary

Keywords

beacon-friendly-format cdisc convert omop-cdm pheno-clinical phenopackets
Last synced: 5 months ago · JSON representation

Repository

The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data

Basic Info
Statistics
  • Stars: 4
  • Watchers: 0
  • Forks: 1
  • Open Issues: 59
  • Releases: 0
Topics
beacon-friendly-format cdisc convert omop-cdm pheno-clinical phenopackets
Created almost 3 years ago · Last pushed 6 months ago
Metadata Files
Readme License Support

README.md

Convert-Pheno Convert-Pheno

A software toolkit for the interconversion of standard data models for phenotypic data

Uptime Robot status ssl-cert-check Docker build server & client codecov version License: GPL-3.0 Documentation Status

Documentation: https://cnag-biomedical-informatics.github.io/convert-pheno-ui

Web APP Playground: https://convert-pheno.cnag.cat

CLI Source Code: https://github.com/cnag-biomedical-informatics/convert-pheno

convert-pheno-ui is a web-interface for the CPAN's module Convert::Pheno which is a software toolkit for the interconversion of standard data models for phenotypic data.

Convert-Pheno-UI

Getting Started

General pre-requisite:

Quick Start

no SSL and user authentication

  1. git clone this repo and then navigate into the folder convert-pheno-ui
  2. rename the file example.env to .env and fill in the variables
  3. Run docker compose up -d
  4. Open your browser and go to http://localhost:4173

For self-hosters:

SSL and keycloak-based user authentication

Convert-Pheno is designed to be run as a collection of microservices. Please consult devdocs/howtoselfhostwkeycloakloginenabled.md how to prepare your environment and run the services.

CITATION

The author requests that any published work that utilizes Convert-Pheno-UI includes a cite to the the following reference:

Rueda, M; Leist, IC et al., (2023). Convert-Pheno: A software toolkit for the interconversion of standard data models for phenotypic data [Software]. Available from https://github.com/cnag-biomedical-informatics/convert-pheno

AUTHOR

Written by Ivo Christopher Leist, PhD student at CNAG https://www.cnag.eu.

COPYRIGHT AND LICENSE

Copyright (C) 2022-2023, Ivo Christopher Leist - CNAG.

GPLv3 - GNU General Public License v3.0

Owner

  • Name: CNAG Biomedical Informatics
  • Login: CNAG-Biomedical-Informatics
  • Kind: organization
  • Location: Spain

GitHub Events

Total
  • Push event: 13
  • Pull request event: 13
  • Create event: 12
Last Year
  • Push event: 13
  • Pull request event: 13
  • Create event: 12

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 6
  • Total pull requests: 63
  • Average time to close issues: 12 days
  • Average time to close pull requests: 9 days
  • Total issue authors: 1
  • Total pull request authors: 3
  • Average comments per issue: 1.5
  • Average comments per pull request: 0.32
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 8
Past Year
  • Issues: 0
  • Pull requests: 23
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • IvoLeist (5)
Pull Request Authors
  • IvoLeist (85)
  • sweep-ai[bot] (5)
  • dependabot[bot] (1)
Top Labels
Issue Labels
sweep (4) bug (1)
Pull Request Labels
sweep (5) dependencies (1)

Dependencies

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convertPheno_client/mockApi/pnpm-lock.yaml npm
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convertPheno_client/package.json npm
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convertPheno_client/pnpm-lock.yaml npm
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