fishbotr

:package: FIShBOTR

https://github.com/gmaynard1/fishbotr

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Academic email domains
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (17.4%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

:package: FIShBOTR

Basic Info
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  • Stars: 0
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Created about 1 year ago · Last pushed 9 months ago
Metadata Files
Readme Changelog Contributing License Code of conduct Citation

README.Rmd

---
output: github_document
---




```{r, include = FALSE}
knitr::opts_chunk$set(collapse  = TRUE,
                      comment   = "#>",
                      fig.path  = "man/figures/",
                      out.width = "100%")
```



FIShBOTR 
=========================================================


[![CRAN status](https://www.r-pkg.org/badges/version/FIShBOTR)](https://CRAN.R-project.org/package=FIShBOTR)
[![R CMD Check](https://github.com/GMaynard1/FIShBOTR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/GMaynard1/FIShBOTR/actions/workflows/R-CMD-check.yaml)
[![Website](https://github.com/GMaynard1/FIShBOTR/actions/workflows/pkgdown.yaml/badge.svg)](https://github.com/GMaynard1/FIShBOTR/actions/workflows/pkgdown.yaml)
[![Test coverage](https://github.com/GMaynard1/FIShBOTR/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/GMaynard1/FIShBOTR/actions/workflows/test-coverage.yaml)
[![codecov](https://codecov.io/gh/GMaynard1/FIShBOTR/branch/master/graph/badge.svg)](https://codecov.io/gh/GMaynard1/FIShBOTR)
[![License: GPL (>= 2)](https://img.shields.io/badge/License-GPL%20%28%3E%3D%202%29-blue.svg)](https://choosealicense.com/licenses/gpl-2.0/)




Overview
Features
Installation
Get started
Long-form documentations
Citation
Contributing
Acknowledgments
References

## Overview The R package `FIShBOTR`provides R helper functions to make use of the FIShBOT dataset. Fishing Industry Shared Bottom Oceanographic Timeseries (FIShBOT) is a standardized in-situ gridded bottom temperature product derived from cooperative research data streams. The data are collected by commercial fishermen operating in US waters of the Northwest Atlantic Ocean. To improve efficiency, the data are stored as a table online. This package converts the data back to a grid and provides a number of functions to facilitate analysis. ## Features The main purpose of `FIShBOTR` is to... **{{ DESCRIBE THE MAIN FEATURES }}** ## Installation You can install the development version from [GitHub](https://github.com/) with: ```{r eval=FALSE} ## Install < remotes > package (if not already installed) ---- if (!requireNamespace("remotes", quietly = TRUE)) { install.packages("remotes") } ## Install < FIShBOTR > from GitHub ---- remotes::install_github("GMaynard1/FIShBOTR") ``` Then you can attach the package `FIShBOTR`: ```{r eval=FALSE} library("FIShBOTR") ``` ## Get started For an overview of the main features of `FIShBOTR`, please read the [Get started](https://GMaynard1.github.io/FIShBOTR/articles/FIShBOTR.html) vignette. ## Long-form documentations `FIShBOTR` provides **{{ NUMBER OF VIGNETTES }}** vignettes to learn more about the package: - the [Get started](https://GMaynard1.github.io/FIShBOTR/articles/FIShBOTR.html) vignette describes the core features of the package - **{{ LIST ADDITIONAL VIGNETTES }}** ## Citation Please cite `FIShBOTR` as: > Maynard George, Salois Sarah (`r format(Sys.Date(), "%Y")`) FIShBOTR: An R package to **{{ TITLE }}**. R package version 0.0.0.9000. ## Contributing All types of contributions are encouraged and valued. For more information, check out our [Contributor Guidelines](https://github.com/GMaynard1/FIShBOTR/blob/main/CONTRIBUTING.md). Please note that the `FIShBOTR` project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/1/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms. ## Acknowledgments **{{ OPTIONAL SECTION }}** ## References **{{ OPTIONAL SECTION }}**

Owner

  • Name: George Maynard
  • Login: GMaynard1
  • Kind: user
  • Location: Woods Hole, MA
  • Company: Northeast Fisheries Science Center -- Cooperative Research

Citation (CITATION.cff)

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: 'FIShBOTR: The Title of the Project'
message: 'To cite package "FIShBOTR" in publications use:'
type: software
authors:
  - family-names: Maynard
    given-names: George
    email: george.maynard@noaa.gov
    orcid: 'https://orcid.org/0000-0003-4246-2345'
  - given-names: Sarah
    family-names: Salois
    email: sarah.salois@noaa.gov
repository-code: 'https://github.com/GMaynard1/FIShBOTR'
url: 'https://github.com/GMaynard1/FIShBOTR'
repository: >-
  https://github.com/CommercialFisheriesResearchFoundation/fishbot
abstract: >-
  This packages provides R helper functions to make use of
  the FIShBOT dataset. Fishing Industry Shared Bottom
  Oceanographic Timeseries (FIShBOT) is a standardized
  in-situ gridded bottom temperature product derived from
  cooperative research data streams. The data are collected
  by commercial fishermen operating in US waters of the
  Northwest Atlantic Ocean. To improve efficiency, the data
  are stored   as a table online. This package converts the
  data back to a grid and provides a number of functions to
  facilitate analysis.
keywords:
  - Oceanography
  - Fisheries
  - Bottom Temperature
license: GPL-2.0-or-later
version: 0.0.0.9000
preferred-citation:
  type: manual
  title: >-
    FIShBOTR: An R package to make use of the Fishing Industry Shared Bottom
    Oceanographic Timeseries
  authors:
    - name: Maynard George
  year: '2025'
  notes: R package version 0.0.0.9000
  url: 'https://github.com/GMaynard1/FIShBOTR'
contact:
  - family-names: Maynard
    given-names: George
    email: george.maynard@noaa.gov
    orcid: 'https://orcid.org/0000-0003-4246-2345'
references:
  - type: software
    title: knitr
    abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
    notes: Suggests
    url: 'https://yihui.org/knitr/'
    repository: 'https://CRAN.R-project.org/package=knitr'
    authors:
      - family-names: Xie
        given-names: Yihui
        email: xie@yihui.name
        orcid: 'https://orcid.org/0000-0003-0645-5666'
    year: '2025'
    doi: 10.32614/CRAN.package.knitr
  - type: software
    title: rmarkdown
    abstract: 'rmarkdown: Dynamic Documents for R'
    notes: Suggests
    url: 'https://pkgs.rstudio.com/rmarkdown/'
    repository: 'https://CRAN.R-project.org/package=rmarkdown'
    authors:
      - family-names: Allaire
        given-names: JJ
        email: jj@posit.co
      - family-names: Xie
        given-names: Yihui
        email: xie@yihui.name
        orcid: 'https://orcid.org/0000-0003-0645-5666'
      - family-names: Dervieux
        given-names: Christophe
        email: cderv@posit.co
        orcid: 'https://orcid.org/0000-0003-4474-2498'
      - family-names: McPherson
        given-names: Jonathan
        email: jonathan@posit.co
      - family-names: Luraschi
        given-names: Javier
      - family-names: Ushey
        given-names: Kevin
        email: kevin@posit.co
      - family-names: Atkins
        given-names: Aron
        email: aron@posit.co
      - family-names: Wickham
        given-names: Hadley
        email: hadley@posit.co
      - family-names: Cheng
        given-names: Joe
        email: joe@posit.co
      - family-names: Chang
        given-names: Winston
        email: winston@posit.co
      - family-names: Iannone
        given-names: Richard
        email: rich@posit.co
        orcid: 'https://orcid.org/0000-0003-3925-190X'
    year: '2025'
    doi: 10.32614/CRAN.package.rmarkdown
  - type: software
    title: testthat
    abstract: 'testthat: Unit Testing for R'
    notes: Suggests
    url: 'https://testthat.r-lib.org'
    repository: 'https://CRAN.R-project.org/package=testthat'
    authors:
      - family-names: Wickham
        given-names: Hadley
        email: hadley@posit.co
    year: '2025'
    doi: 10.32614/CRAN.package.testthat
    version: '>= 3.0.0'

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