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https://github.com/cobralab/make_slice_images

https://github.com/cobralab/make_slice_images

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.0%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: CoBrALab
  • Language: Shell
  • Default Branch: master
  • Size: 8.79 KB
Statistics
  • Stars: 1
  • Watchers: 2
  • Forks: 0
  • Open Issues: 4
  • Releases: 0
Created over 1 year ago · Last pushed about 1 year ago
Metadata Files
Readme

README.md

makesliceimages

Tool for generating 2D JPEG images slicing through 3D data for Quality Control, with overlay support Usage: ./make_slice_images.sh [-h|--help] [--label-overlay <arg>] [--label-overlay-opacity <arg>] [--additional-row <arg>] [--crop-file <arg>] [--transverse-slices <arg>] [--coronal-slices <arg>] [--sagittal-slices <arg>] [--colour-map <arg>] [-d|--(no-)debug] <input> <output> <input>: Input file, MINC or NIFTI <output>: Output JPG Image -h, --help: Prints help --label-overlay: Labels to overlay on each image row, repeat for additional rows (empty by default) --label-overlay-opacity: Label overlay opacity (default: '0.3') --additional-row: Generate additional image row from different files, repeat for more rows (empty by default) --crop-file: Use bounding box of file for all slicing bounds (no default) --transverse-slices: Number of slices to generate for transverse direction (default: '10') --coronal-slices: Number of slices to generate for coronal direction (default: '10') --sagittal-slices: Number of slices to generate for sagittal direction (default: '10') --colour-map: Colour map to use for images (default: 'gray') -d, --debug, --no-debug: Show all internal commands and logic for debug (off by default)

Owner

  • Name: Computational Brain Anatomy Laboratory
  • Login: CoBrALab
  • Kind: organization
  • Email: contact@cobralab.ca
  • Location: Montreal, QC

Computational Brain Anatomy Laboratory, located in the CIC at the Douglas Institute, McGill University

GitHub Events

Total
  • Issues event: 4
  • Watch event: 1
  • Issue comment event: 2
  • Push event: 8
  • Create event: 2
Last Year
  • Issues event: 4
  • Watch event: 1
  • Issue comment event: 2
  • Push event: 8
  • Create event: 2