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Recent Releases of https://github.com/cokelaer/damona

https://github.com/cokelaer/damona - v0.15.2

Fix online registry access (Default behaviour) Full Changelog: https://github.com/cokelaer/damona/compare/v0.15.1...v0.15.2

- Python
Published by cokelaer about 1 year ago

https://github.com/cokelaer/damona - v0.15.1

use loguru, new version since 0.15.0 cannot be released properly (already used by mistakes) Full Changelog: https://github.com/cokelaer/damona/compare/v0.14.7...v0.15.1

- Python
Published by cokelaer about 1 year ago

https://github.com/cokelaer/damona - v0.15.0

Fix #35 and full biocontainer integration. Full Changelog: https://github.com/cokelaer/damona/compare/v0.14.4...v0.15.0

- Python
Published by cokelaer over 1 year ago

https://github.com/cokelaer/damona - v0.14.7

New sequana_tools container, bcftools

Full Changelog: https://github.com/cokelaer/damona/compare/v0.14.6...v0.14.7

- Python
Published by cokelaer over 1 year ago

https://github.com/cokelaer/damona - v0.14.6

Full Changelog: https://github.com/cokelaer/damona/compare/v0.14.5...v0.14.6

added: meme updated: freebayes 1.3.9

- Python
Published by cokelaer over 1 year ago

https://github.com/cokelaer/damona - v0.14.5

Full Changelog: https://github.com/cokelaer/damona/compare/v0.14.4...v0.14.5

  • Updates: update pyproject to use poetry2.0 and drop py3.8 support for py3.12
  • ADDED wget 1.25.4, chromap 0.2.7, qc3c 0.5.0 and pairtools 1.1.2

- Python
Published by cokelaer over 1 year ago

https://github.com/cokelaer/damona - v0.14.4

pilon and rnafold added

- Python
Published by cokelaer over 1 year ago

https://github.com/cokelaer/damona - v0.14.3

Full Changelog: https://github.com/cokelaer/damona/compare/v0.14.2...v0.14.3

- Python
Published by cokelaer over 1 year ago

https://github.com/cokelaer/damona - v0.14.2

added lima software

- Python
Published by cokelaer over 1 year ago

https://github.com/cokelaer/damona - v0.14.1

  • core: add message to update damona if newer release
  • add liftoff, ragtag, mcl, orthofinder

- Python
Published by cokelaer over 1 year ago

https://github.com/cokelaer/damona - v0.14.0

  • Progress bar when uplloading
  • Better search command
  • more containers (infernal, poplypolish, hmmer, etc)

- Python
Published by cokelaer over 1 year ago

https://github.com/cokelaer/damona - v0.13.1

better "damona search" command and more containers. See README

- Python
Published by cokelaer over 1 year ago

https://github.com/cokelaer/damona - v0.13.0

  • Fix zenodo max rate limits to get stats
  • More software recipes and updates

Full Changelog: https://github.com/cokelaer/damona/compare/v0.12.3...v0.13.0

- Python
Published by cokelaer almost 2 years ago

https://github.com/cokelaer/damona - v0.12.3

Full Changelog: https://github.com/cokelaer/damona/compare/v0.12.1...v0.12.3

- Python
Published by cokelaer almost 2 years ago

https://github.com/cokelaer/damona - v0.12.1

Full Changelog: https://github.com/cokelaer/damona/compare/v0.12.0...v0.12.1

- Python
Published by cokelaer about 2 years ago

https://github.com/cokelaer/damona - v0.12.0

Change zenodo-upload subcommand to 'upload'. More recipes and containers

- Python
Published by cokelaer over 2 years ago

https://github.com/cokelaer/damona - v0.11.1

add pbsim, update hifiasm

- Python
Published by cokelaer over 2 years ago

https://github.com/cokelaer/damona - v0.11.0

  • core development: add precommit, update to use pyproject, fix CI.
  • more recipes for containers

- Python
Published by cokelaer over 2 years ago

https://github.com/cokelaer/damona - v0.10.0

  • core : ADD zsh support
  • UPDATE flye 2.9.1
  • ADD nanopolish
  • UPDATE: remove nanopolish from sequana_tools binaries

- Python
Published by cokelaer almost 3 years ago

https://github.com/cokelaer/damona - v0.9.1

What's Changed

  • Fix damona install with specified binaries and minor docs fixes by @khourhin in https://github.com/cokelaer/damona/pull/29
  • Add recipes: Trinity, Trinotate, Transdecoder, Hmmer, bowtie2 new version by @khourhin in https://github.com/cokelaer/damona/pull/30
  • Add Guppy 6.2

New Contributors

  • @khourhin made their first contribution in https://github.com/cokelaer/damona/pull/29

Full Changelog: https://github.com/cokelaer/damona/compare/v0.9.0...v0.9.1

- Python
Published by cokelaer almost 3 years ago

https://github.com/cokelaer/damona - v0.9.0

Full Changelog: https://github.com/cokelaer/damona/compare/v0.8.4...v0.9.0

Major change of API on the main damona command. The subcommand env was split into create/delete/rename.

More containers available

- Python
Published by cokelaer almost 3 years ago

https://github.com/cokelaer/damona - v0.8.4

What's Changed

  • add blast & medaka & prokka & quast by @ddesvillechabrol in https://github.com/cokelaer/damona/pull/25
  • add medaka and blast registry by @ddesvillechabrol in https://github.com/cokelaer/damona/pull/26
  • update graphviz by @ddesvillechabrol in https://github.com/cokelaer/damona/pull/27

Full Changelog: https://github.com/cokelaer/damona/compare/v0.8.3...v0.8.4

- Python
Published by cokelaer about 3 years ago

https://github.com/cokelaer/damona - v0.8.3

What's Changed

  • add busco img by @ddesvillechabrol in https://github.com/cokelaer/damona/pull/22
  • add minimap2 v2.24.0 by @ddesvillechabrol in https://github.com/cokelaer/damona/pull/23
  • more tools such as pbbam, circlator, ccs
  • changes in the damona software itself: dedicated registry for sandbox and add 'community' on zenod now taken into account

- Python
Published by cokelaer about 3 years ago

https://github.com/cokelaer/damona - v0.8.2

general addition of new software

- Python
Published by cokelaer over 3 years ago

https://github.com/cokelaer/damona - v0.8.1

New release to also access to all dockers from biocontainers

- Python
Published by cokelaer over 4 years ago

https://github.com/cokelaer/damona - v0.8.0

Fix regression when specifying the version of the software to be installed

- Python
Published by cokelaer over 4 years ago

https://github.com/cokelaer/damona - v0.7.1

  • Integrate fishshell as a compatible shell with autocompletion included
  • command export has now a --output option
  • added command 'damona list'

- Python
Published by cokelaer over 4 years ago

https://github.com/cokelaer/damona - v0.7.0

Stable release of damona.

Future changes are for admin usage (e.g., stats) and improvements of the remove command (to handle cleaner removal when binary belongs to several images).

- Python
Published by cokelaer over 4 years ago

https://github.com/cokelaer/damona - v0.6.0

  • better - simpler bash script
  • ability to add/delete a software from different images
  • add --rename in 'damona env'
  • base environment is now at the same level as users' environment
  • add the --help in activate/deactivate commands (non-trivial due to shell script dependence)
  • add zenodo upload for admin

- Python
Published by cokelaer over 4 years ago

https://github.com/cokelaer/damona - v0.5.5

Fix recipe and main version

- Python
Published by cokelaer over 4 years ago

https://github.com/cokelaer/damona - v0.5.4

- Python
Published by cokelaer over 4 years ago

https://github.com/cokelaer/damona - v0.5.3

Fix shell/config creation

- Python
Published by cokelaer over 4 years ago

https://github.com/cokelaer/damona - v0.5.2

add missing shell package

- Python
Published by cokelaer almost 5 years ago

https://github.com/cokelaer/damona - v0.5.1

add DAMONASINGULARITYOPTIONS fixing 0.5.0 release

- Python
Published by cokelaer almost 5 years ago

https://github.com/cokelaer/damona - v.0.4.3 synchronised with pypi

This release includes the activate/deactivate features

- Python
Published by cokelaer almost 6 years ago

https://github.com/cokelaer/damona - v0.4.2 synchronised with pypi

- Python
Published by cokelaer almost 6 years ago

https://github.com/cokelaer/damona - v.0.4.1 synchronised with pypi

- Python
Published by cokelaer almost 6 years ago