https://github.com/collinschwantes/mosquitoapp
Vector control application
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○Scientific vocabulary similarity
Low similarity (12.8%) to scientific vocabulary
Repository
Vector control application
Basic Info
- Host: GitHub
- Owner: collinschwantes
- Language: HTML
- Default Branch: master
- Size: 481 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 9
- Releases: 1
Metadata Files
Readme.md
Mosquito Control Aid
This project aims to make an accessible model for mosquito control resource optimization. The model uses data provided by users to estimate the mosquito populations in the sampling area for the sampling timeperiod, and the optimal time to apply a treatment or multiple treatments.
Link to application: https://collin-schwantes.shinyapps.io/MosquitoApp/
What you will find in this repository
- Code for R shiny application
- Code for statistical model underlying application
- Project mgmt/group communication
- Instructions for using the application
- example CSVs for uploading
- Model interpretation
- disclaimer
Please use the Issues tab to propose enhancements, propose new features, report bugs, or make other project related suggestions.
Instructions for using the application
This application accepts CSV and excel files (.xls, .xlsx) as inputs. None of your data are stored long term on the Rshiny servers. At the moment, only a single spreadsheet can be uploaded. If you have multiple years of data, please consolidate to one spread sheet.
- Consistent date formats are required
- Example Data Sheet
- Minimum data requirements for model:
- Count data
- Date Collected User will provide the following inputs in the application:
- estimated mosquito lifespan
- Percent of the mosquito population knocked down for a treatment
- Number of treatments to be applied in a season
- number of days between treatments
This is a summary of the model draft provided by Jeff Demers.
Problem:
When is the best time to spray given local mosquito populations?
Limitations: Noisy data, irregular sampling effort(?), irregular sampling periodicity(?), May not know when control actions were taken/effort of application, potential limited ability to collect data on covariates (temp, elevation, etc)
variables:
x(t) = vector population at time t
Λ(t) = time varying emergence rate (genus or species specific, likely temp dependent as well)
1/µ = natural vector lifetime (species and temp dependent)
τ = year/season/period
N = noisy mosquito pop estimates/impulses
λ = emergence rate
populations based soley on females?
Use the population data to determine a schedule for Np impulses to occur over a year, assuming that each impulse reduces the vector population by a fraction ρ. Let z = (z1, z2, ..., zp) denote the timing of the Np impulses
potential pain points
1) Model interpretation 2) Appropriate model outputs 3) Computationally expensive
Owner
- Name: Collin Schwantes
- Login: collinschwantes
- Kind: user
- Location: Washington, DC
- Website: http://collinschwantes.github.io
- Repositories: 26
- Profile: https://github.com/collinschwantes
GitHub Events
Total
Last Year
Issues and Pull Requests
Last synced: about 1 year ago
All Time
- Total issues: 43
- Total pull requests: 0
- Average time to close issues: about 2 months
- Average time to close pull requests: N/A
- Total issue authors: 1
- Total pull request authors: 0
- Average comments per issue: 0.58
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- collinschwantes (40)