https://github.com/colomoto/colomoto-jupyter - 0.9.1

Full Changelog: https://github.com/colomoto/colomoto-jupyter/compare/v0.9.0...v0.9.1

- Python
Published by pauleve 11 months ago

https://github.com/colomoto/colomoto-jupyter - 0.9.0 Menus are back

• Restore menus, toolbar and upload by @pictavien

Full Changelog: https://github.com/colomoto/colomoto-jupyter/compare/v0.8.21...v0.9.0

- Python
Published by pauleve 11 months ago

https://github.com/colomoto/colomoto-jupyter - 0.8.21

• change mime type for graph svg output to fix HTML export of notebooks

- Python
Published by pauleve over 1 year ago

https://github.com/colomoto/colomoto-jupyter - 0.8.20

• cellcollective: fix (again) API entry point
• setup_helper: add support for .conda archives

Full Changelog: https://github.com/colomoto/colomoto-jupyter/compare/v0.8.11...v0.8.20

- Python
Published by pauleve over 1 year ago

https://github.com/colomoto/colomoto-jupyter - 0.8.11

• Fix CellCollective API entry point for fetching models

- Python
Published by pauleve over 1 year ago

https://github.com/colomoto/colomoto-jupyter - 0.8.10

• 🐍 setup_helper: filter conda packages with correct python version

- Python
Published by pauleve over 1 year ago

https://github.com/colomoto/colomoto-jupyter - 0.8.9

• improve constant detection in minibn.struct_of_dnf
• colomoto.types: improve compatibility with espresso alternatives

- Python
Published by pauleve over 1 year ago

https://github.com/colomoto/colomoto-jupyter - 0.8.8

minibn: - add BooleanNetwork.save method

- Python
Published by pauleve almost 3 years ago

https://github.com/colomoto/colomoto-jupyter - 0.8.7

• fix minibn.BooleanNetwork.__call__

- Python
Published by pauleve about 3 years ago

https://github.com/colomoto/colomoto-jupyter - 0.8.6

Changes: - minibn: improve constants() and simplify() methods

Bugfixes: - modelchecking: fix ITS formula syntax

- Python
Published by pauleve about 3 years ago

https://github.com/colomoto/colomoto-jupyter - 0.8.5

• minibn: workaround evaluation of constants

- Python
Published by pauleve over 3 years ago

https://github.com/colomoto/colomoto-jupyter - 0.8.4

• minibn.BooleanNetwork: support for comments in .bnet rules

- Python
Published by pauleve about 4 years ago

https://github.com/colomoto/colomoto-jupyter - 0.8.3

• compatibility with Python 3.10

colomoto.minibn.BooleanNetwork: * add make_hash method (https://github.com/colomoto/colomoto-jupyter/commit/c719f658e8792b0cb57c816f6797f6446a9d664f) * random_walk stops at fixed points

- Python
Published by pauleve over 4 years ago

https://github.com/colomoto/colomoto-jupyter - 0.8.2

miniBN (colomoto.minibn): * add loops option for *Dynamics * add generic random walk for UpdateModeDynamics sub-classes

Others: * fix setup_helper on Windows + add possibility to invoke within Python

- Python
Published by pauleve almost 5 years ago

https://github.com/colomoto/colomoto-jupyter - v0.8.1

minibn: * API change for Dynamics classes * BlockParallelDynamics

- Python
Published by pauleve over 5 years ago

https://github.com/colomoto/colomoto-jupyter - v0.8.0

minibn.BooleanNetwork: * add dynamics and partial_dynamics methods to compute state transition graph with various update modes * implemented update modes: synchronous, asynchronous, general, and bloc-sequential

- Python
Published by pauleve over 5 years ago

https://github.com/colomoto/colomoto-jupyter - v0.7.90

Major changes: * colomoto.io.ensure_localfile caches the model file by default. The previous behaviour can be enforced by setting colomoto_jupyter.conf.auto_persistent = False

- Python
Published by pauleve over 5 years ago

https://github.com/colomoto/colomoto-jupyter - v0.7.3

• new colomoto.minibn.BooleanNetwork.to_pyboolnet method

- Python
Published by pauleve over 5 years ago

https://github.com/colomoto/colomoto-jupyter - v0.7.2

• cellcollective: adjust to new API
• cellcollective.load: help making it persistent
• fix tabluate with multi-index

- Python
Published by pauleve over 5 years ago

https://github.com/colomoto/colomoto-jupyter - v0.7.1

Do not depend on pygraphviz

- Python
Published by pauleve almost 6 years ago

https://github.com/colomoto/colomoto-jupyter - v0.7.0

New features: * tabulate supports displaying data with 2-level indexes * count and simplify methods for generic types Hypercube and HypercubeCollection * pandas.DataFrame conversion of generic types Hypercube and HypercubeCollection

- Python
Published by pauleve almost 6 years ago

https://github.com/colomoto/colomoto-jupyter - v0.6.5

• skip JS injection with COLOMOTOSKIPJUPYTER_JS=1 (ease batch execution of notebooks)

- Python
Published by pauleve about 6 years ago

https://github.com/colomoto/colomoto-jupyter - v0.6.4

• fix confusing behaviour of tabulate with indexes

- Python
Published by pauleve about 6 years ago

https://github.com/colomoto/colomoto-jupyter - v0.6.3

• show: add is_svg parameter for handling SVG

- Python
Published by pauleve about 6 years ago

https://github.com/colomoto/colomoto-jupyter - v0.6.2

Improvements in colomoto.minibn: * supports for biolqm and ginsim objects as argument for the constructor * basic implementation for simulations (see https://gist.github.com/pauleve/84260fd37ead5947895b596775e98ed4)

- Python
Published by pauleve over 6 years ago

https://github.com/colomoto/colomoto-jupyter - v0.6.1

Improvements in colomoto.minibn: * BooleanNetwork.simplify() apply stronger simplifications for DNFs * add MultiValuedNetwork.simplify() method

- Python
Published by pauleve over 6 years ago

https://github.com/colomoto/colomoto-jupyter - v0.6

colomoto_jupyter: * tabulate function now uses pandas and sorting for pretty display

colomoto.minibn: * add sanitize_names() and rename() methods * load accepts remote files

- Python
Published by pauleve over 6 years ago

https://github.com/colomoto/colomoto-jupyter - colomoto-jupyter 0.5.11

• fix compatibility with recent IPython versions

- Python
Published by pauleve over 6 years ago

https://github.com/colomoto/colomoto-jupyter - colomoto-jupyter 0.5.10

Added: * colomoto.helpers.layout_graph: returns layout of a networkx graph using GraphViz * rough influence_graph() for colomoto.minibn.MultiValuedNetwork

- Python
Published by pauleve over 6 years ago

https://github.com/colomoto/colomoto-jupyter - colomoto-jupyter 0.5.9

new methods for minibn.BooleanNetwork : * __call__(x): returns f(x) * constants(): returns a mapping between constant nodes and their constant value.

- Python
Published by pauleve over 6 years ago