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Open Source Science

https://github.com/comic/evalutils

evalutils helps users create extensions for grand-challenge.org

https://github.com/comic/evalutils

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.6%) to scientific vocabulary

Keywords

docker machine-learning pandas python36 scikit-learn simpleitk

Keywords from Contributors

medical-imaging challenges
Last synced: 5 months ago · JSON representation

Repository

evalutils helps users create extensions for grand-challenge.org

Basic Info
Statistics
  • Stars: 23
  • Watchers: 4
  • Forks: 9
  • Open Issues: 0
  • Releases: 10
Topics
docker machine-learning pandas python36 scikit-learn simpleitk
Created almost 8 years ago · Last pushed 11 months ago
Metadata Files
Readme Changelog License

README.md

evalutils

Build Status PyPI version PyPI - Python Version Documentation Status Code style

evalutils contains useful functions for evaluating machine learning models in the context of medical imaging.

Features

  • Bounding box annotations with Jaccard Index calculations
  • Calculations of bootstrapped ROC curves
  • Scoring for detection tasks
  • Efficient calculation of confusion matrices, jaccard scores, dice scores, hausdorff distances, absolute volume differences, and relative volume differences

Getting Started

evalutils requires Python 3.9 or above, and can be installed from pip. Please see the Getting Started documentation for more details.

Owner

  • Name: Consortium for Open Medical Image Computing
  • Login: comic
  • Kind: organization

GitHub Events

Total
Last Year

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 433
  • Total Committers: 12
  • Avg Commits per committer: 36.083
  • Development Distribution Score (DDS): 0.513
Past Year
  • Commits: 2
  • Committers: 1
  • Avg Commits per committer: 2.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
James Meakin j****n@g****m 211
pyup-bot g****t@p****o 151
silvandeleemput s****t@g****m 57
Harm van Zeeland h****d@g****m 3
miriam-groeneveld 5****d 2
HolyGuacamole H****e 2
Chris van Run c****n 2
Ruben K R****l 1
GabyVS 6****c 1
Kiran Vaidhya k****3@g****m 1
Kicksta k****n@g****m 1
Keelin Murphy k****m@g****m 1
Committer Domains (Top 20 + Academic)
pyup.io: 1

Issues and Pull Requests

Last synced: 8 months ago

All Time
  • Total issues: 49
  • Total pull requests: 60
  • Average time to close issues: 9 months
  • Average time to close pull requests: 11 days
  • Total issue authors: 14
  • Total pull request authors: 9
  • Average comments per issue: 1.82
  • Average comments per pull request: 1.27
  • Merged pull requests: 53
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 1
  • Average time to close issues: 3 days
  • Average time to close pull requests: 4 minutes
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • silvandeleemput (15)
  • jmsmkn (11)
  • JunMa11 (4)
  • kiranvaidhya (4)
  • GabyRumc (4)
  • prash-p (3)
  • Luoxd1996 (1)
  • lesolorzanov (1)
  • Louisvh (1)
  • Rubenkl (1)
  • mattmagic149 (1)
  • EdwardZhao1991 (1)
  • pkcakeout (1)
  • joeranbosma (1)
Pull Request Authors
  • jmsmkn (19)
  • silvandeleemput (17)
  • pyup-bot (16)
  • miriam-groeneveld (2)
  • GabyRumc (2)
  • Kicksta (1)
  • kiranvaidhya (1)
  • Rubenkl (1)
  • chrisvanrun (1)
Top Labels
Issue Labels
enhancement (6) bug (2) wontfix (1)
Pull Request Labels
enhancement (7) bug (3)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 1,426 last-month
  • Total docker downloads: 11
  • Total dependent packages: 2
  • Total dependent repositories: 30
  • Total versions: 28
  • Total maintainers: 1
pypi.org: evalutils

evalutils helps users create extensions for grand-challenge.org

  • Versions: 28
  • Dependent Packages: 2
  • Dependent Repositories: 30
  • Downloads: 1,426 Last month
  • Docker Downloads: 11
Rankings
Dependent repos count: 2.7%
Dependent packages count: 3.1%
Docker downloads count: 4.3%
Downloads: 6.9%
Average: 6.9%
Forks count: 11.4%
Stargazers count: 13.3%
Maintainers (1)
jamesmeakin
Last synced: 6 months ago

Dependencies

pyproject.toml pypi
  • pytest * develop
  • pytest-cov * develop
  • pytest-randomly * develop
  • pytest-xdist * develop
  • sphinx * develop
  • sphinx_autodoc_typehints * develop
  • SimpleITK >=2.0,!=2.1.1.1
  • click *
  • cookiecutter *
  • imageio *
  • numpy --- - !ruby/hash:ActiveSupport::HashWithIndifferentAccess version: "^1.21" python: "<3.8" - !ruby/hash:ActiveSupport::HashWithIndifferentAccess version: "^1.22" python: ">=3.8,<3.10"
  • pandas ^1.3
  • python >=3.7.1,<3.10
  • scikit-learn *
  • scipy *
  • setuptools *
.github/workflows/ci.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v3 composite
  • peaceiris/actions-gh-pages v3 composite