https://github.com/compomics/ms-lims
Mass spectrometry based proteomics information management system.
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: ncbi.nlm.nih.gov -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.5%) to scientific vocabulary
Repository
Mass spectrometry based proteomics information management system.
Basic Info
Statistics
- Stars: 2
- Watchers: 14
- Forks: 1
- Open Issues: 6
- Releases: 0
Metadata Files
README.md
ms-lims
Project Description
The ms_lims project provides a lightweight, portable yet production-grade solution for managing mass spectrometry based proteomics data.
MS-based proteomics produces large amounts of mass spectra that require processing, identification and possibly quantification before interpretation can be undertaken. High-throughput studies require automation of these various steps, and management of the data in association with the results obtained. We here present ms_lims, a freely available, open-source system based on a central database to automate data management and processing in MS-driven proteomics analyses.
Citation
Helsens, K., Colaert, N., Barsnes, H., Muth, T., Flikka, K., Staes, A., Timmerman, E., Wortelkamp, S., Sickmann, A., Vandekerckhove, J., et al. (2010). ms_lims, a simple yet powerful open source LIMS for mass spectrometry-driven proteomics. Proteomics epub (pid: 20058248).
Downloads
Download ms-lims 7.7.7 here.
Usage
- The zip file contains the ms-lims jar file and all the libraries needed to run the tool. Double clicking this resulting jar file will start ms-lims.
- Download the manual here.
- Download the database schema here.
- Check out the release notes and database updates in the wiki section.
Troubleshooting
Please report any issues or requests in the issues section. We will attempt to come up with a solution as soon as possible.
Related Projects
Ms-lims makes use of compomics-utilities.
You might also find some of the following projects interesting: Peptizer, dbtoolkit, ms-lims, Rover and PeptideShaker
Project Support
The ms-lims project is grateful for the support by:
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| IntelliJ | Netbeans | Java | Maven |
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Owner
- Name: Computational Omics and Systems Biology Group
- Login: CompOmics
- Kind: organization
- Email: compomics.list@gmail.com
- Website: https://www.compomics.com/
- Twitter: CompOmics
- Repositories: 93
- Profile: https://github.com/CompOmics
The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.
GitHub Events
Total
Last Year
Dependencies
- com.compomics:mascotdatfile 3.2.11
- com.compomics:peptizer 1.8.2
- com.compomics:rover 2.3.6
- com.compomics:thermo_msf_parser 1.0.5
- com.compomics:utilities 3.3.5
- com.jgoodies:looks 2.2.2
- commons-configuration:commons-configuration 1.4
- commons-httpclient:commons-httpclient 3.1
- commons-io:commons-io 1.3.1
- commons-logging:commons-logging 1.1
- jackcess:jackcess 1.1.9
- lennart:cpdetector 1.0.4
- lennart:statlib 0.3
- lennart:xxindex 0.5
- log4j:log4j 1.2.12
- mysql:mysql-connector-java 3.1.12-bin
- niklaas:jmol 12.0.43
- xpp3:xpp3 1.1.3.4-RC3
- junit:junit 3.8.1 test
- lennart:lmjunit 1.1 test