https://github.com/compomics/mascotdatfile
Java API for MS/MS search results by Mascot (Matrix Science).
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: ncbi.nlm.nih.gov -
○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.5%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Java API for MS/MS search results by Mascot (Matrix Science).
Basic Info
- Host: GitHub
- Owner: CompOmics
- Language: Java
- Default Branch: master
- Homepage: http://compomics.github.io/projects/mascotdatfile.html
- Size: 29.8 MB
Statistics
- Stars: 3
- Watchers: 17
- Forks: 0
- Open Issues: 1
- Releases: 0
Topics
Metadata Files
README.md
MascotDatfile
Project Description
Proteomics bioinformatics deals with organising and analysing large amounts of information generated during proteomic analyses. The vast amounts of mass spectrometry data are typically interpreted by database search algorithms such as Mascot Server from Matrix Science. The results of such a search are presented in an user-friendly HTML page, yet, this is inconvenient when further processing is required. Therefore we have developed the MascotDatfile library which transforms a flat file into a dynamic object model.
Helsens et al. MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results. Proteomics (2007) vol. 7 (3) pp. 364-6 (PUBMED ID:17203510)
Download
| Download | Version | Release info |
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| 3.6.1 - All platforms | Release notes |
Usage
See the wiki for additional information on how to setup, run and configure MascotDatfile.
Project Support
The MascotDatfile project is grateful for the support by:
| Compomics | VIB | Ghent University|
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| IntelliJ | Netbeans | Java | Maven |
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Owner
- Name: Computational Omics and Systems Biology Group
- Login: CompOmics
- Kind: organization
- Email: compomics.list@gmail.com
- Website: https://www.compomics.com/
- Twitter: CompOmics
- Repositories: 93
- Profile: https://github.com/CompOmics
The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| arzach84 | n****t@g****m | 35 |
| kennyhelsens | k****s@3****b | 34 |
| harald.barsnes | h****s@3****b | 22 |
| Harald Barsnes | h****s@g****m | 13 |
| davy.maddelein@gmail.com | d****n@g****m@3****b | 10 |
| mvaudel@gmail.com | m****l@g****m@3****b | 10 |
| lennart.martens | l****s@3****b | 5 |
| Iain | i****7@g****m | 5 |
| Marc Vaudel | m****l@g****m | 2 |
| mvaudel | m****l@3****b | 1 |
| nielshulstaert@gmail.com | n****t@g****m@3****b | 1 |
| harry.r.wang | h****g@3****b | 1 |
| Fengchao | f****b@c****k | 1 |
| dependabot[bot] | 4****] | 1 |
Committer Domains (Top 20 + Academic)
Dependencies
- com.compomics:utilities 4.10.0
- com.lowagie:itext 2.0.8
- commons-io:commons-io 1.3.1
- commons-logging:commons-logging 1.1
- psidev.psi.tools:xxindex 0.11
- junit:junit 4.13.1 test