https://github.com/compomics/mappi-dat
analysis and data management tool for high-throughput protein-protein interaction data generated from microarray-MAPPIT system
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: ncbi.nlm.nih.gov -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.2%) to scientific vocabulary
Repository
analysis and data management tool for high-throughput protein-protein interaction data generated from microarray-MAPPIT system
Basic Info
Statistics
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Metadata Files
README.md
MAPPI-DAT
Project Description
MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Analysis Tool) is an automated high-throughput data management and analysis system for microarray-MAPPIT system. MAPPI-DAT is capable of processing many thousand data points for each experiment, and comprising a data storage system that stores the experimental data in a structured way.
MAPPI-DAT application include graphical user interface. The analysis system is comprising of three steps: normalization, analysis and post filtration. The management system contains a back-end relational database and retrieval system, allowing user to store and download different projects using MAPPI-DAT interface with three main divisions for analysis, database submission and retrieval.
Citation
“MAPPI-DAT: data management and analysis for protein-protein interaction data from the high-throughput MAPPIT cell microarray platform” Surya Gupta, Veronic De Puysseleyr, José Van der Heyden, Davy Maddelein, Irma Lemmens, Sam Lievens, Sven Degroeve, Jan Tavernier, and Lennart Martens. Bioinformatics 2017; 33 (9): 1424-1425, PMID: 28104627
Downloads
Python project: MAPPI-DAT project can be downloaded from MAPPI-DAT.
Windows stand-alone files: window compatible .exe files can be downloaded from:
database schema: MySQL schema for the MAPPI-DAT can be downloaded from here
Usage
See the manual for further information about how to use the tool.
Sample data can be downloaded from here
Project Support
MAPPI-DAT project is supported by:
| Compomics | VIB | Ghent University|
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Owner
- Name: Computational Omics and Systems Biology Group
- Login: CompOmics
- Kind: organization
- Email: compomics.list@gmail.com
- Website: https://www.compomics.com/
- Twitter: CompOmics
- Repositories: 93
- Profile: https://github.com/CompOmics
The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.