https://github.com/compomics/dbtoolkit
Manipulating fasta sequence databases
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: ncbi.nlm.nih.gov -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.3%) to scientific vocabulary
Repository
Manipulating fasta sequence databases
Basic Info
Statistics
- Stars: 1
- Watchers: 15
- Forks: 2
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
dbtoolkit
Project Description
The dbtoolkit application enables easy manipulation of fasta sequence database in a user-friendly environment. Sequence databases can be merged, shuffled, truncated, etc... Furthermore, for more experienced users, the Java API provides a well documented and easy-to-use environment for customized fasta database manipulations.
Citation
Martens et al. DBToolkit: processing protein databases for peptide-centric proteomics. Bioinformatics (2005) vol. 21 (17) pp. 3584-5 (pid: 16030071)
Download
Download version 4.2.5 of dbtoolkit 2.0 as a zip file here.
Usage
See the usage file for additional information on how to use the library.
Project Support
The dbtoolkit project is grateful for the support by:
| Compomics | VIB | Ghent University|
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| IntelliJ | Netbeans | Java | Maven |
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Owner
- Name: Computational Omics and Systems Biology Group
- Login: CompOmics
- Kind: organization
- Email: compomics.list@gmail.com
- Website: https://www.compomics.com/
- Twitter: CompOmics
- Repositories: 93
- Profile: https://github.com/CompOmics
The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.
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Dependencies
- com.compomics:utilities 4.2.9
- junit:junit 3.8.1 test