https://github.com/computational-biology-aachen/ojip-pqredox
https://github.com/computational-biology-aachen/ojip-pqredox
Science Score: 26.0%
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Low similarity (6.8%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: Computational-Biology-Aachen
- Language: Jupyter Notebook
- Default Branch: main
- Size: 136 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
OJIP-PQredox
Python scipts analysing OJIP data to determine the VJ parameter as a semi-quantitative measure for PQ-redox.
The accompanying paper Assessing the redox state of the plastoquinone pool in algae and cyanobacteria via OJIP fluorescence: limits and perspectives is currently in the publishing process.
Each analysis described in the manuscript is provided as a separate Jupyter notebook (.ipynb) and can be executed locally to repeat the analyses.
Installation
To clone the repository and install a conda environment, please follow these instructions
bash
git clone https://github.com/Computational-Biology-Aachen/OJIP-PQredox.git
cd OJIP-PQredox
conda env create -f environment.yml
To execute the analysis notebooks, the measured experimental data will need to be placed in the data folder. Please contact the authors for access to the data.
Authors
Tomáš Zavřel(1), Anne-Christin Pohland(2), Tobias Pfenning(3,4), Anna Barbara Matuszyńska(3,4), Szilvia Tóth(5), Gábor Bernát(5), Jan Červený(1)
1 Department of Adaptive Biotechnologies, Global Change Research Institute, Czech Academy of Sciences, Brno, Czechia
2 Centre for Synthetic Biology, Technical University Darmstadt, Darmstadt, Germany
3 Computational Life Science, Department of Biology, RWTH Aachen University, Aachen, Germany
4 Cluster of Excellence on Plant Sciences, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
5 Laboratory for Molecular Photobioenergetics, Institute of Plant Biology, Biological Research Centre, Szeged, Hungary
6 Aquatic Botany and Microbial Ecology Research Group, HUN-REN Balaton Limnological Research Institute, Tihany, Hungary
Owner
- Name: Computational-Biology-Aachen
- Login: Computational-Biology-Aachen
- Kind: organization
- Repositories: 1
- Profile: https://github.com/Computational-Biology-Aachen
GitHub Events
Total
- Member event: 1
- Push event: 10
- Create event: 4
Last Year
- Member event: 1
- Push event: 10
- Create event: 4