Mangal.jl and EcologicalNetworks.jl - v0.5.2

EcologicalNetworks v0.5.2

Diff since v0.5.1

Closed issues: - Calculating trophic levels (#202)

Merged pull requests: - Trophic bugfixes (#204) (@mjsmith037) - Fix trophic level (#206) (@tpoisot)

Scientific Software - Peer-reviewed - Julia
Published by tpoisot over 4 years ago

Mangal.jl and EcologicalNetworks.jl - v0.5.1

EcologicalNetworks v0.5.1

Diff since v0.5.0

Closed issues: - return order of node metrics (#192) - Base.contains and Base.in overload for determining if a species is in a network (#196) - Implementation of ρ_ska normalization is incorrect when providing undirected (mirrored) networks (#203)

Merged pull requests: - ✏fix equations information docs (#195) (@MichielStock) - Spectral radius bug fix (#205) (@tpoisot)

Scientific Software - Peer-reviewed - Julia
Published by tpoisot over 4 years ago

Mangal.jl and EcologicalNetworks.jl - v0.5.0

EcologicalNetworks v0.5.0

Diff since v0.4.3

Merged pull requests: - Information theory (#190) (@MichielStock) - update version for CI (#193) (@tpoisot)

Scientific Software - Peer-reviewed - Julia
Published by tpoisot almost 5 years ago

Mangal.jl and EcologicalNetworks.jl - v0.4.3

EcologicalNetworks v0.4.3

Diff since v0.4.2

Closed issues: - The linearfilter documentation should specify which value of alpha does what (#160) - JOSS: Slight clarification of installation instructions (#167) - JOSS: Textual edits to paper (#168)

Merged pull requests: - Improved performance of function lp (#188) (@Inazuma110)

Scientific Software - Peer-reviewed - Julia
Published by tpoisot about 5 years ago

Mangal.jl and EcologicalNetworks.jl - v0.4.2

EcologicalNetworks v0.4.2

Diff since v0.4.1

Closed issues: - Modularity for bipartite networks (#187)

Merged pull requests: - Memory saving for Q (#186) (@Inazuma110)

Scientific Software - Peer-reviewed - Julia
Published by tpoisot about 5 years ago

Mangal.jl and EcologicalNetworks.jl - v0.4.1

EcologicalNetworks v0.4.1

Diff since v0.4.0

Merged pull requests: - RDPG src and docs (#150) (@gvdr) - update Mangal integration example (#182) (@FrancisBanville) - start adding community detection functions (#183) (@tpoisot) - Some performance improvements (#184) (@tpoisot) - RDPG (#185) (@tpoisot)

Scientific Software - Peer-reviewed - Julia
Published by tpoisot over 5 years ago

Mangal.jl and EcologicalNetworks.jl - v0.4.0

EcologicalNetworks v0.4.0

Diff since v0.3.1

Closed issues: - Need an A method to get the adjacency matrix (#180) - Centrality measures (#181)

Merged pull requests: - Replace the dense network by a sparse array (#179) (@tpoisot)

Scientific Software - Peer-reviewed - Julia
Published by tpoisot over 5 years ago

Mangal.jl and EcologicalNetworks.jl - v0.3.1

EcologicalNetworks v0.3.1

Diff since v0.3.0

Closed issues: - Negative modularity when species cannot interact with themselves (#161) - Functional role should not be NaN (#162) - JOSS: Does authorship match contributions? (#166) - JOSS: EcoJulia link doesn't work. (#170) - JOSS: Include code example in docs (#171)

Merged pull requests: - CompatHelper: bump compat for "DataStructures" to "0.18" (#163) (@github-actions[bot]) - JOSS paper (#164) (@FrancisBanville) - CompatHelper: bump compat for "Distributions" to "0.24" (#165) (@github-actions[bot]) - Address review comments (#169) (@FrancisBanville) - Example use case (#172) (@FrancisBanville) - Avoids returning NaN in functional roles (#173) (@tpoisot) - add DataFrames and Plots to doc dependencies (#174) (@FrancisBanville) - Additional examples (#175) (@tpoisot) - fix example use case (#176) (@FrancisBanville)

Scientific Software - Peer-reviewed - Julia
Published by tpoisot over 5 years ago

Mangal.jl and EcologicalNetworks.jl - v0.3.0

EcologicalNetworks v0.3.0

Diff since v0.2.2

Merged pull requests: - Install TagBot as a GitHub Action (#151) (@JuliaTagBot) - Update develop with master (#152) (@tpoisot) - Prepare for new release (#153) (@tpoisot) - CompatHelper: add new compat entry for "Distributions" at version "0.23" (#154) (@github-actions[bot]) - CompatHelper: add new compat entry for "StatsBase" at version "0.33" (#155) (@github-actions[bot]) - CompatHelper: add new compat entry for "Combinatorics" at version "1.0" (#156) (@github-actions[bot]) - CompatHelper: add new compat entry for "Requires" at version "1.0" (#157) (@github-actions[bot]) - CompatHelper: add new compat entry for "DataStructures" at version "0.17" (#158) (@github-actions[bot])

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 6 years ago

Mangal.jl and EcologicalNetworks.jl - v0.2.2

v0.2.2 (2019-10-17)

Diff since v0.2.1

Closed issues:

• Spectral radius (#147)
• Document the djikstra function (#146)
• Info about upcoming removal of packages in the General registry (#145)
• V 0.2.0 (#141)

Merged pull requests:

• Feature spectral radius (#148) (tpoisot)
• Update README.md (#143) (tpoisot)

Scientific Software - Peer-reviewed - Julia
Published by julia-tagbot[bot] over 6 years ago

Mangal.jl and EcologicalNetworks.jl - v0.2.1

v0.2.1 (2019-07-23)

Diff since v0.2.0

Merged pull requests:

• update the null doc (#142) (tpoisot)

Scientific Software - Peer-reviewed - Julia
Published by julia-tagbot[bot] almost 7 years ago

Mangal.jl and EcologicalNetworks.jl - v0.2.0

v0.2.0 (2019-07-08)

Diff since v0.1.0

Closed issues:

• Import Pajek food web dataset (#137)
• Replace null3in and null3out by null3 (#135)
• Prepare to tag v0.1.0 (#132)
• New null model (#130)
• Compute stability parameter (#129)
• Interpretation probabilistic network (#122)
• Standardize badges shown in README (#120)
• Add repostatus badges to all README (#119)
• Create .github folders for PR / issues template (#118)
• Linear filter has rounding errors (#115)

Merged pull requests:

• Pajek reader + foodweb data (#140) (tpoisot)
• Resilience (#139) (MichielStock)
• Replace null3 functions by a single one using dims (#138) (tpoisot)
• Prepare for v0.2.0 (#136) (tpoisot)
• CSS update for Documenter.css (#134) (tpoisot)
• :tada: add multiplicative null (#131) (MichielStock)

Scientific Software - Peer-reviewed - Julia
Published by julia-tagbot[bot] almost 7 years ago