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Open Source Science

https://github.com/con/catenate

All the resources and conText a new conScript needs, smushed together into a single doc.

https://github.com/con/catenate

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: science.org, frontiersin.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

All the resources and conText a new conScript needs, smushed together into a single doc.

Basic Info
  • Host: GitHub
  • Owner: con
  • Default Branch: main
  • Size: 60.5 KB
Statistics
  • Stars: 2
  • Watchers: 6
  • Forks: 4
  • Open Issues: 3
  • Releases: 0
Created over 3 years ago · Last pushed about 1 year ago
Metadata Files
Readme

README.md

con/catenate

All the resources and conText a new conScript needs, smushed together into a single repository.

Welcome

Welcome to the Center for Open Neuroscience, where we are working together to make Neuroscience a better science!

We do that by developing standards, workflows, tools, and automation to improve the effieniency, transparency, and reproducibility of the next generation of Neuroscience.

Employees

If you are a new employee of the Center for Open Neuroscience, see con/boarding.

The Ecosystem

There are a LOT of things to know! We have a handy definitions page, which briefly introduces acronyms, projects, and more with links.

The Vision

Here are a few resources that can help to understand how the projects fit together into the Open Neuroscience ecosystem.

Intro slides

5 Steps to More Reproducible Neuroimaging Research : High level of how many of the ReproNim projects fit together into a Reproducibility-friendly workflow.

1. Study Design
2. Data Collection
3. Data Processing
4. Statistical Analysis
5. Publication

Dartmouth neuroimaging fundamentals : Course that covers basic MRI physics, and high level explanations of programming, data analysis, and more!

(private) ReproNim grant 2021 drive : All the drafts and responses of the 2021 ReproNim Grant.

Open is not enough. Let’s take the next step: an integrated, community-driven computing platform for neuroscience : note written in 2012

Promoting an open research culture

Dianne Patterson's Neuroimaging Core Docs for the University of Arizona group is an excellent resource that covers usage of many open source Neuroimaging tools for BIDS data.

Extra fun

A new virtue of phantom MRI data: explaining variance in human participant data

Useful projects/References

Python project templates

  • Python package template for new research software projects: https://github.com/UCL-ARC/python-tooling
  • Utility to create a basic Python project structure with tests, CI etc.: https://github.com/neuroinformatics-unit/python-cookiecutter
  • A template for small scientific python projects (aged): https://github.com/uwescience/shablona
  • CON @jwodder's template: https://github.com/jwodder/pyrepo

Neuroimaging project templates

  • Template repo for bootstrapping and maintaining SOPs (Standard operation procedures): https://github.com/nipreps/SOPs-Cookiecutter

Owner

  • Name: Center for Open Neuroscience
  • Login: con
  • Kind: organization
  • Email: debian@oneukrainian.com
  • Location: Dartmouth College, USA

GitHub Events

Total
  • Push event: 4
  • Pull request review comment event: 7
  • Pull request review event: 9
  • Pull request event: 6
  • Fork event: 1
Last Year
  • Push event: 4
  • Pull request review comment event: 7
  • Pull request review event: 9
  • Pull request event: 6
  • Fork event: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 0
  • Total pull requests: 3
  • Average time to close issues: N/A
  • Average time to close pull requests: 7 days
  • Total issue authors: 0
  • Total pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 3
  • Average time to close issues: N/A
  • Average time to close pull requests: 7 days
  • Issue authors: 0
  • Pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • asmacdo (3)
  • yarikoptic (1)
  • candleindark (1)
Pull Request Authors
  • asmacdo (3)
  • CodyCBakerPhD (1)
  • yarikoptic (1)
  • candleindark (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

.github/workflows/codespell.yml actions
  • actions/checkout v4 composite
  • codespell-project/actions-codespell v2 composite