biocon-sousa-repro-dynamics
This repository contains the source code for the study "Reproductive dynamics of an inshore delphinid reflect demographic consequences of large-scale coastal constructions" published in Biological Conservation.
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Repository
This repository contains the source code for the study "Reproductive dynamics of an inshore delphinid reflect demographic consequences of large-scale coastal constructions" published in Biological Conservation.
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Metadata Files
README.md
Reproductive dynamics of an inshore delphinid reflect demographic consequences of large-scale coastal constructions
Chan, S.C.Y.#, Ho, Y.-W.#, & Karczmarski, L.# (2024). Reproductive dynamics of an inshore delphinid reflect demographic consequences of large-scale coastal constructions. Biological Conservation, 297, 110690.
Crude birth rate (CBR) and annual recruitment rate (ARR) of Indo-Pacific humpback dolphins estimated using frequentist (red) and Bayesian (blue) statistical techniques. OLS regression models indicate that both CBR and ARR declined significantly following the onset of construction activities.
Abstract
In fast-developing regions, rapid coastal urbanization has led to considerable transformation of both landscapes and seascapes, with various adverse implications for species dependent on inshore habitats. As reliable estimates of vital demographic rates reflect the population-level responses to stressors, rigorous quantification of these parameters is central to assessing the consequences of human-induced environmental change. As a case-in-point, we quantified the reproductive parameters and calf survivorship of an obligatory inshore delphinid, the Indo-Pacific humpback dolphin (Sousa chinensis), in the anthropogenic seascape of Hong Kong prior and during two consecutive large-scale coastal infrastructure projects. Our 8-year photo-ID mark-recapture dataset was examined with both frequentist and Bayesian techniques. The reproductive output of female dolphins worsened significantly following the onset of construction activities, eventually declining alarmingly close to zero. Annual recruitment rate followed a similar trajectory. Concurrently, calf survival rates (pooled across the study period) were low, with <60% of newborns surviving the first 3-month and <46% surviving their first year of life. Both mean crude birth rate (~0.03) and annual recruitment rate (~0.02) were among the lowest reported for coastal delphinids to date. Cumulatively, all of this slows population recruitment and increases population susceptibility to stochastic events. We conclude that natural factors alone are not likely to cause such critically low demographic rates, underscoring the vulnerability of obligatory inshore species to growing anthropogenic pressure and habitat loss in fast-changing coastal seas. We emphasize the need for proactive (instead of reactive) conservation based on reliable sentinel model system and wise use of the precautionary principle.
Software implementation
All source code used for analysis and figure generation in this study is available in analysis.ipynb. The notebook includes scripts for both frequentist and Bayesian statistical analyses, providing a comprehensive view of the methods applied to assess the impact of coastal constructions on dolphin demographics.
Data Availability
The analytical code supporting our findings is included in this repository. For additional information or data requests, please contact the authors at Cetacea Research Institute:
Citation
Chan, S.C.Y.#, Ho, Y.-W.#, & Karczmarski, L.# (2024). Reproductive dynamics of an inshore delphinid reflect demographic consequences of large-scale coastal constructions. Biological Conservation, 297, 110690.
Owner
- Name: Yuen-Wa Ho
- Login: YuenWaHo
- Kind: user
- Repositories: 1
- Profile: https://github.com/YuenWaHo
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this code, please cite it as below."
title: "Reproductive dynamics of an inshore delphinid reflect demographic consequences of large-scale coastal constructions"
type: "Software"
authors:
- family-names: "Chan"
given-names: "Stephen C.Y."
orcid: "https://orcid.org/0000-0002-0157-9574 "
email: "scychan@cetacea-institute.org"
affiliation: "1"
- family-names: "Ho"
given-names: "Yuen Wa"
orcid: "https://orcid.org/0000-0003-1523-112X"
email: "hoyuenwa@cetacea-institute.org"
affiliation: "1"
- family-names: "Karczmarski"
given-names: "Leszek"
orcid: "https://orcid.org/0000-0001-9712-1172"
email: "leszek@cetacea-institute.org"
affiliation: "1"
affiliations:
- name: "Division of Cetacean Ecology, Cetacea Research Institute, Lantau, Hong Kong"
index: 1
date-released: 2024-06-14
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