Releases | Open Source Science

GeophysicalFlows.jl - v0.16.4

GeophysicalFlows v0.16.4

Merged pull requests: - Add finite depth functionality to SurfaceQG (#375) (@mncrowe) - Update He & Wang 2024 (#379) (@navidcy) - Cleanup for MultilayerQG fluxes + add test for fluxes with nlayers=3 (#380) (@navidcy) - Cleaning up (#381) (@navidcy) - Update Pudig and Smith (2025) (#382) (@navidcy) - Add QGDipoles.jl (#384) (@navidcy)

Closed issues: - Add finite depth parameter to SQG model (surfaceqg.jl) (#374)

Scientific Software - Peer-reviewed - Julia
Published by navidcy 8 months ago

GeophysicalFlows.jl - v0.16.3-docs

Scientific Software - Peer-reviewed - Julia
Published by navidcy 11 months ago

GeophysicalFlows.jl - v0.16.3

GeophysicalFlows v0.16.3

Diff since v0.16.2

Merged pull requests: - Clarify examples/README (#366) (@glwagner) - Update paper reference (#369) (@navidcy) - Add Crowe and Sutyrin (#370) (@navidcy) - Julia v1.11 for CI + update installation Julia version recommendations (#371) (@navidcy) - Drop appveyor badge (#372) (@navidcy) - Accelerating MultiLayerQG on GPUs + remove hardcoded 2-layer implementation (#373) (@mpudig) - Simpler default for b in MultilayerQG (#377) (@navidcy) - Use CairoMakie v0.13 in Docs (#378) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy 11 months ago

GeophysicalFlows.jl - v0.16.2

GeophysicalFlows v0.16.2

Diff since v0.16.1

Merged pull requests: - Add two papers in list of "papers using GeophysicalFlows.jl" (#353) (@navidcy) - Fix typo in doi link (#354) (@navidcy) - Add Parfenyev et al 2024 (#355) (@navidcy) - Add more refs (#357) (@navidcy) - Update Shokar et al. (2024) (#358) (@navidcy) - Add background zonal flow U or U(y) in the SingleLayerQG module (#360) (@mncrowe) - Update papers using GeophysicalFlows.jl list (#363) (@navidcy) - Update papers using GeophysicalFlows (#364) (@navidcy)

Closed issues: - Add background flow functionality in SingleLayerQG model (#359) - Add Pudig & Smith 2024 in the papers list (#362)

Scientific Software - Peer-reviewed - Julia
Published by navidcy over 1 year ago

GeophysicalFlows.jl - v0.16.1

GeophysicalFlows v0.16.1

Diff since v0.16.0

Merged pull requests: - Add reference for LaCasce et al. 2024 (#347) (@navidcy) - Use Julia v1.10 for CI and building Docs (#348) (@navidcy) - Update Parfenyev 2024 reference (#349) (@navidcy) - Use randn! for stochastic forcing implementations (#351) (@navidcy) - Bump patch release (#352) (@navidcy)

Closed issues: - Issue with stochastic forcing implementation on GPU (#350)

Scientific Software - Peer-reviewed - Julia
Published by navidcy almost 2 years ago

GeophysicalFlows.jl - v0.16.0

GeophysicalFlows v0.16.0

Diff since v0.15.3

Merged pull requests: - Add references in the Docs via DocumenterCitations.jl (#334) (@navidcy) - Add SLT preprint (#336) (@navidcy) - Docs dev appear just after stable in the list of available versions (#338) (@navidcy) - Add compat entries for Standard Library (#340) (@navidcy) - Add Parfenyev (2022, 2023) papers (#341) (@navidcy) - Add Bischoff and Deck (2023) (#342) (@navidcy) - Accepting buoyancy instead of density in MultiLayerQG module (#343) (@mpudig) - Update Drivas & Elgindi ref (#345) (@navidcy) - Bump compat for FourierFlows + CUDA v5 (#346) (@navidcy)

Closed issues: - Add citations in the Docs via DocumenterCitations.jl (#333) - Mistake in stretching matrix in multilayerqg.jl (#339)

Scientific Software - Peer-reviewed - Julia
Published by navidcy about 2 years ago

GeophysicalFlows.jl - v0.15.4

GeophysicalFlows v0.15.4

Diff since v0.15.3

Merged pull requests: - Add references in the Docs via DocumenterCitations.jl (#334) (@navidcy) - Add SLT preprint (#336) (@navidcy) - Docs dev appear just after stable in the list of available versions (#338) (@navidcy) - Add compat entries for Standard Library (#340) (@navidcy) - Add Parfenyev (2022, 2023) papers (#341) (@navidcy) - Add Bischoff and Deck (2023) (#342) (@navidcy) - Update Drivas & Elgindi ref (#345) (@navidcy) - Bump compat for FourierFlows + CUDA v5 (#346) (@navidcy)

Closed issues: - Add citations in the Docs via DocumenterCitations.jl (#333) - Mistake in stretching matrix in multilayerqg.jl (#339)

Scientific Software - Peer-reviewed - Julia
Published by navidcy about 2 years ago

GeophysicalFlows.jl - v0.15.3

GeophysicalFlows v0.15.3

Diff since v0.15.2

Merged pull requests: - Bit of cleanup and using views in MultiLayerQG module (#293) (@navidcy) - Fixing sign error for mean meridional PV gradient Qy in MultiLayerQG module (#329) (@mjclobo) - Add Julia v1.9 on CI (#330) (@navidcy) - Add Siegelman & Young 2023 + use Documenter v1 (#332) (@navidcy)

Closed issues: - Stratified Flows module (#93) - Convert diagnostics output for MultiLayerQG from Arrays to Tuples? (#273) - Sign error for mean PV gradient Qy in MultiLayerQG module (#328)

Scientific Software - Peer-reviewed - Julia
Published by navidcy about 2 years ago

GeophysicalFlows.jl - v0.15.2

GeophysicalFlows v0.15.2

Diff since v0.15.1

Closed issues: - Should we be passing forcing_spectrum as argument into calcF!? (#299)

Merged pull requests: - Enforce paper title capitalization in bibtex entry (#315) (@navidcy) - Faster and with reduced memory allocations calcF! function in examples with stochastic noise (#316) (@navidcy) - Remove a stray space (#318) (@navidcy) - Test on julia 1.8 (#320) (@navidcy) - Update paper citation (#321) (@jbisits) - Fix multilayer example @id label (#322) (@navidcy) - Add palinstrophy diagnostic in TwoDNavierStokes (#323) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy almost 3 years ago

GeophysicalFlows.jl - v0.15.1

GeophysicalFlows v0.15.1

Diff since v0.15.0

Closed issues: - Option to specify PV gradients explicitly rather than computing them spectrally (#307)

Merged pull requests: - Use Makie for plots in Docs/Stochastic Forcing + new Docs/Vizualize output section + fix some docstrings (#306) (@navidcy) - Adds papers that use GeophysicalFlows.jl (#309) (@navidcy) - Fix normalization from uh -> ûₖ (#312) (@navidcy) - Option to specify topographic PV large-scale gradients in MultiLayerQG (#313) (@apaloczy) - Add warning for using MultiLayerQG with single fluid layer (#314) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy about 3 years ago

GeophysicalFlows.jl - v0.15.0

GeophysicalFlows v0.15.0

Diff since v0.14.2

Merged pull requests: - Docs delete .jld2 files after build (#300) (@navidcy) - Clean up docs before deploy (#301) (@navidcy) - Delete .jld2 file when we are done (#302) (@navidcy) - Force push when deploying Docs (#303) (@navidcy) - Update to latest grid refactor (#305) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy over 3 years ago

GeophysicalFlows.jl - v0.14.2

GeophysicalFlows v0.14.2

Diff since v0.14.1

Closed issues: - Plots no longer accepts functions as clims (#261) - Demonstrate save/load output functionality in an example (#269) - enstrophy and cuda problem (#296)

Merged pull requests: - Convert example to use Makie.jl instead of Plots.jl + add links to examples in Docs/Modules (#288) (@navidcy) - Update/fix docstrings (#291) (@navidcy) - Convert arrays to proper format depending on device (#297) (@navidcy) - Require FourierFlows 0.9.2 (#298) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy over 3 years ago

GeophysicalFlows.jl - v0.14.1

GeophysicalFlows v0.14.1

Diff since v0.14.0

Closed issues: - م (#287) - Potential missing factor in MultiLayerQG.energies (#292)

Merged pull requests: - Add comment regarding installing CUDA in examples that require it (#285) (@navidcy) - Cancel previous docs built (#286) (@navidcy) - CompatHelper: bump compat for DocStringExtensions to 0.9, (keep existing compat) (#289) (@github-actions[bot]) - Fix MultilayerQG tests on GPU (#290) (@navidcy) - Fix potential energy calculation bug in MultiLayerQG.energies (#294) (@apaloczy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy over 3 years ago

GeophysicalFlows.jl - v0.14.0

GeophysicalFlows v0.14.0

Diff since v0.13.1

Merged pull requests: - Docstring brush-up (#272) (@navidcy) - Support SpecialFunctions 2.x (#276) (@stevengj) - Drop support for Julia v1.5 (#277) (@navidcy) - CompatHelper: bump compat for FourierFlows to 0.8, (keep existing compat) (#278) (@github-actions[bot]) - Adds remark for use of FilteredTimestepper in examples (#281) (@navidcy) - Use FourierFlows v0.9.0 and avoid CUDA v3.7.0 (#282) (@navidcy) - Drop remark about Julia v1.0.5 (#283) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy almost 4 years ago

GeophysicalFlows.jl - v0.13.1

GeophysicalFlows v0.13.1

Diff since v0.13.0

Optimize MultiLayerQG run fast on the GPU for two fluid layer configurations.

Closed issues: - MultilayerQG example crashed at about 35000 steps (#265) - Optimized PV inversion for two layer case in MultilayerQG (#267)

Merged pull requests: - Cleanup docs deps (#253) (@navidcy) - Fixes typo + better equations render in Docs/BarotropicQL (#254) (@navidcy) - Updates docs packages (#255) (@navidcy) - Add CITATION.cff (#256) (@navidcy) - Drop remark on compatible versions Julia v1.4 (#257) (@navidcy) - Enhance instructions in examples/README (#258) (@navidcy) - Add compat entry for Literate and change output directory for literated examples (#259) (@navidcy) - Adds kwarg devbranch="main" in docs.make.jl (#260) (@navidcy) - Fix a typo in contributing.md (#262) (@szy21) - Pin CUDA.jl and Plots.jl (#263) (@navidcy) - Reduce tilmestep in baroclinic instability MultiLayerQG example (#266) (@navidcy) - Optimize 2-layer configs for MultiLayerQG (#270) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy about 4 years ago

GeophysicalFlows.jl - v0.13.0

GeophysicalFlows v0.13.0

Diff since v0.12.3

Closed issues: - No need to import FFTW in examples (#248)

Merged pull requests: - Dealias sol before computing nonlinear terms (#246) (@navidcy) - Removes unused imports of FFTW.jl (#249) (@navidcy) - Adds aliased_fraction kwarg in Problem constructors (#250) (@navidcy) - Better parameters for baroclinic instability example (#251) (@navidcy) - Removes dealiasing from some examples for better visualization (#252) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy over 4 years ago

GeophysicalFlows.jl - v0.12.3

GeophysicalFlows v0.12.3

Diff since v0.12.2

Closed issues: - MultiLayerQG tests fail on Julia v1.6 (#228)

Merged pull requests: - Drop the in-house @has_cuda macro (#232) (@navidcy) - Drops references to travis (#237) (@navidcy) - Fix MultilayerQG module on GPU & Julia v1.6 (#238) (@navidcy) - Drops reference to Travis (#239) (@navidcy) - Use FourierFlows v0.6.19 that resolves FourierFlows/FourierFlows.jl#281 (#242) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy over 4 years ago

GeophysicalFlows.jl - v0.12.2

GeophysicalFlows v0.12.2

Diff since v0.12.1

Merged pull requests: - Remove debugging test from example (#231) (@navidcy) - JOSS paper folder + update citations (#233) (@navidcy) - Docs/GPU: punctuation + slight rephrase (#234) (@navidcy) - Fix bib entry (#235) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy over 4 years ago

GeophysicalFlows.jl - v0.12.1

GeophysicalFlows v0.12.1

Diff since v0.12.0

Merged pull requests: - Update FourierFlows compat requirements (#230) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy over 4 years ago

GeophysicalFlows.jl - v0.12.0

GeophysicalFlows v0.12.0

Diff since v0.11.7

Closed issues: - @reexport using FourierFlows in GeophysicalFlows.jl? (#33) - Random number generator: cpu/gpu (#97)

Merged pull requests: - Simplify examples (#229) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy over 4 years ago

GeophysicalFlows.jl - v0.11.7

GeophysicalFlows v0.11.7

Diff since v0.11.6

Closed issues: - Use CUDA.randn(nx, ny) instead of cu(randn(nx, ny)) (#223)

Merged pull requests: - CompatHelper: bump compat for "CUDA" to "3.0" (#222) (@github-actions[bot]) - Some typos + fixes in Contirbutor's Guide (#224) (@navidcy) - Optimize calcF! in examples with stochastic forcing (#225) (@navidcy) - Readme: scalability after modules (#226) (@navidcy) - Temporarily allow tests to fail on Julia v1.6 (#227) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy over 4 years ago

GeophysicalFlows.jl - v0.11.6

GeophysicalFlows v0.11.6

Diff since v0.11.5

Closed issues: - Add remark on multithreading/multiple GPU limitations that FourierFlows.jl imposes (#210) - Add Installation Instructions section in Docs (#211)

Merged pull requests: - Adds installation instructions in Docs (#212) (@navidcy) - Enhance Module pages in Docs (#213) (@navidcy) - Minor phrasal improvements in Docs/Contributors Guide (#214) (@navidcy) - appveyor badge + rephrase installing on Julia v1.0.5 (#215) (@navidcy) - Minor beautification in example (#216) (@navidcy) - Fixes in the Docs (#217) (@navidcy) - Add scalability remarks (#219) (@navidcy) - Fix some bugs (#221) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy almost 5 years ago

GeophysicalFlows.jl - v0.11.5

GeophysicalFlows v0.11.5

Diff since v0.11.4

Closed issues: - Examples on GPU (#167) - Contributors Section in Docs (#180) - JOSS paper (#187) - Launching the example "2D dcaying turbulence" in binder does not work (#203)

Merged pull requests: - Minor tweaks in Examples (#201) (@navidcy) - Some minor docstring fixes in TwoDNavierStokes module (#202) (@navidcy) - Adds Contributor's Guide in Docs + CONTRIBUTING.md (#204) (@navidcy) - Examples run on GPU() (#207) (@navidcy) - Warning when user wants MultiLayerQG on the GPU (#208) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy almost 5 years ago

GeophysicalFlows.jl - v0.8.5

GeophysicalFlows v0.8.5

Diff since v0.8.4

Closed issues: - Scalar operations on GPU arrays: a potential source of slowdown (#29) - Separate updatevars! for physical space and Fourier space (#81) - Animations in Docs don't show up in Safari (#113) - Convention for the hypoviscosity order: should it be positive or negative (#115) - Clean up comments regarding work done by stochastic forcing (#117) - Add clarification in Docs regarding running examples (#132) - Some of the animations have the axes flipped (#134) - Add 1.5-layer QG functionality (#137) - SurfaceQG not defined (#144) - Move GPU tests from gitlab to buildkite? (#146) - Enhance docstrings (#156) - Move toward unicode -- help the users move with us (#166) - SingleLayerQG.gettopographicPVgrid_values() could be applicable in more situations (#170)

Merged pull requests: - Remove cfl definitions from runtests.jl (#142) (@navidcy) - Enhance examples + Fix some plot orientations (#145) (@navidcy) - Clean up BarotropicQG module (#147) (@navidcy) - Fix nbviewer and binder urls in barotropicqgdecaytopography.jl (#150) (@navidcy) - CompatHelper: bump compat for "StaticArrays" to "1.0" (#152) (@github-actions[bot]) - Clean up exports from BarotropicQG module (#153) (@navidcy) - Optimize BarotropicQGQL (#154) (@navidcy) - Clearer syntax/function arguments + better docs for MultilayerQG (#155) (@navidcy) - Convert all animations in Docs from mp4 to gifs (#157) (@navidcy) - SingleLayerQG (#160) (@liasiegelman) - Fix an erroneous space in docstrings + don't forcepush docs (#161) (@navidcy) - Fix indentation (#164) (@navidcy) - minor tweak (#165) (@navidcy) - Increases coverage for SingleLayerQG (#168) (@navidcy) - MultilayerQG -> MultiLayerQG (#171) (@navidcy) - Changes \upsilon -> v in Docs (#173) (@navidcy) - Improvements in TwoDNavierStokes (#174) (@navidcy) - Adds notes in Docs about unicode & Fourier transforms normalization (#175) (@navidcy) - CompatHelper: bump compat for "Reexport" to "1.0" (#176) (@github-actions[bot]) - change BarotropicQG -> SingleLayerQG (#177) (@navidcy) - Docs: simplify notation + update Docs/Forcing section + remove Ito comments from modules/tests (#178) (@navidcy) - Back to mp4 for Docs (#181) (@navidcy) - A bit less wide plot (#182) (@navidcy) - Better doc badges (#183) (@navidcy) - Minor enhancements in Docs/Stochastic Forcing section (#184) (@navidcy) - Drop travis and gitlab in favor of buildkite (#185) (@navidcy) - Use FourierFlows.ongrid() functionality (#186) (@navidcy) - Updates in TwoDNavierStokes Docs/Docstrings (#188) (@navidcy) - Suggested updates to JOSS paper (#189) (@BrodiePearson) - Enhance SurfaceQG docstrings (#190) (@navidcy) - Enhances docstrings and Docs/modules (#191) (@navidcy) - Use FourierFlows.on_grid() in BarotropicQGQL (#192) (@navidcy) - More enhancements in docstrings and Docs/modules (#193) (@navidcy) - Sign error in SingleLayerQG dynamics (#195) (@navidcy) - Fixes a typo in TwoDNavierStokes Docs/Module (#196) (@navidcy) - Enhancement in Docs/Stochastic Forcing (#197) (@navidcy) - Fix typo in Docs (#198) (@navidcy) - CompatHelper: bump compat for "JLD2" to "0.4" (#199) (@github-actions[bot]) - Fixes some typos + clarifications in Stochastic Forcing section (#200) (@navidcy) - Minor tweaks in Examples (#201) (@navidcy) - Some minor docstring fixes in TwoDNavierStokes module (#202) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy almost 5 years ago

GeophysicalFlows.jl - v0.11.4

GeophysicalFlows v0.11.4

Diff since v0.11.3

Merged pull requests: - Sign error in SingleLayerQG dynamics (#195) (@navidcy) - Fixes a typo in TwoDNavierStokes Docs/Module (#196) (@navidcy) - Enhancement in Docs/Stochastic Forcing (#197) (@navidcy) - Fix typo in Docs (#198) (@navidcy) - CompatHelper: bump compat for "JLD2" to "0.4" (#199) (@github-actions[bot]) - Fixes some typos + clarifications in Stochastic Forcing section (#200) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy almost 5 years ago

GeophysicalFlows.jl - v0.11.3

GeophysicalFlows v0.11.3

Diff since v0.11.2

Closed issues: - Enhance docstrings (#156) - SingleLayerQG.gettopographicPVgrid_values() could be applicable in more situations (#170)

Merged pull requests: - CompatHelper: bump compat for "Reexport" to "1.0" (#176) (@github-actions[bot]) - Minor enhancements in Docs/Stochastic Forcing section (#184) (@navidcy) - Drop travis and gitlab in favor of buildkite (#185) (@navidcy) - Use FourierFlows.ongrid() functionality (#186) (@navidcy) - Updates in TwoDNavierStokes Docs/Docstrings (#188) (@navidcy) - Suggested updates to JOSS paper (#189) (@BrodiePearson) - Enhance SurfaceQG docstrings (#190) (@navidcy) - Enhances docstrings and Docs/modules (#191) (@navidcy) - Use FourierFlows.ongrid() in BarotropicQGQL (#192) (@navidcy) - More enhancements in docstrings and Docs/modules (#193) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy almost 5 years ago

GeophysicalFlows.jl - v0.11.2

GeophysicalFlows v0.11.2

Diff since v0.11.1

Merged pull requests: - A bit less wide plot (#182) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy almost 5 years ago

GeophysicalFlows.jl - v0.11.1

GeophysicalFlows v0.11.1

Diff since v0.11.0

Closed issues: - Animations in Docs don't show up in Safari (#113)

Merged pull requests: - Back to mp4 for Docs (#181) (@navidcy)

Scientific Software - Peer-reviewed - Julia
Published by navidcy almost 5 years ago

GeophysicalFlows.jl - v0.11.0

GeophysicalFlows v0.11.0

Diff since v0.10.0

Closed issues: - Convention for the hypoviscosity order: should it be positive or negative (#115) - Clean up comments regarding work done by stochastic forcing (#117) - Move toward unicode -- help the users move with us (#166)

Merged pull requests: - CompatHelper: bump compat for "StaticArrays" to "1.0" (#152) (@github-actions[bot]) - minor tweak (#165) (@navidcy) - Increases coverage for SingleLayerQG (#168) (@navidcy) - MultilayerQG -> MultiLayerQG (#171) (@navidcy) - Changes \upsilon -> v in Docs (#173) (@navidcy) - Improvements in TwoDNavierStokes (#174) (@navidcy) - Adds notes in Docs about unicode & Fourier transforms normalization (#175) (@navidcy) - change BarotropicQG -> SingleLayerQG (#177) (@navidcy) - Docs: simplify notation + update Docs/Forcing section + remove Ito comments from modules/tests (#178) (@navidcy)