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https://github.com/core-unit-bioinformatics/workflow-smk-varlociraptor-variant-calling

A forked Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.

https://github.com/core-unit-bioinformatics/workflow-smk-varlociraptor-variant-calling

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
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    codemeta.json file
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    .zenodo.json file
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    DOI references
    Found 3 DOI reference(s) in README
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    Links to: zenodo.org
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    Scientific vocabulary similarity
    Low similarity (5.1%) to scientific vocabulary
Last synced: 9 months ago · JSON representation

Repository

A forked Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.

Basic Info
  • Host: GitHub
  • Owner: core-unit-bioinformatics
  • License: mit
  • Language: Python
  • Default Branch: master
  • Homepage:
  • Size: 17.2 MB
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Fork of snakemake-workflows/dna-seq-varlociraptor
Created over 3 years ago · Last pushed over 3 years ago

https://github.com/core-unit-bioinformatics/workflow-smk-varlociraptor-variant-calling/blob/master/ 

# Snakemake workflow: dna-seq-varlociraptor

[![Snakemake](https://img.shields.io/badge/snakemake-6.3.0-brightgreen.svg)](https://snakemake.github.io)
[![GitHub actions status](https://github.com/snakemake-workflows/dna-seq-varlociraptor/workflows/Tests/badge.svg?branch=master)](https://github.com/snakemake-workflows/dna-seq-varlociraptor/actions?query=branch%3Amaster+workflow%3ATests)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4675661.svg)](https://doi.org/10.5281/zenodo.4675661)


A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of [Varlociraptor](https://varlociraptor.github.io).


## Usage

The usage of this workflow is described in the [Snakemake Workflow Catalog](https://snakemake.github.io/snakemake-workflow-catalog/?usage=snakemake-workflows%2Fdna-seq-varlociraptor).

If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) repository and its DOI (see above).

Owner

  • Name: core-unit-bioinformatics
  • Login: core-unit-bioinformatics
  • Kind: organization

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