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Open Source Science

https://github.com/cossio/rfam.jl

https://github.com/cossio/rfam.jl

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.6%) to scientific vocabulary

Keywords from Contributors

archival projection profiles optim numeric rbm sequences interactive numerical-methods generic
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: cossio
  • License: mit
  • Language: Julia
  • Default Branch: master
  • Size: 65.4 KB
Statistics
  • Stars: 3
  • Watchers: 2
  • Forks: 0
  • Open Issues: 1
  • Releases: 15
Created over 4 years ago · Last pushed 10 months ago
Metadata Files
Readme Changelog License

README.md

Rfam Julia package

Julia package to interface with the Rfam database. Only takes care of finding, downloading, and returning the path to files from the database (e.g. Rfam.cm, fasta files, etc.).

Installation

This package is registered. Install with:

julia import Pkg Pkg.add("Rfam")

This package does not export any symbols.

Example

```julia import Rfam import FASTX

fasta = Rfam.fasta_file("RF00162"); # downloads RF00162.fasta file and returns local path records = collect(FASTX.FASTA.Reader(open(fasta))); # convert to Fasta records ```

Related

  • https://github.com/cossio/Infernal.jl

Owner

  • Name: Jorge Fernandez-de-Cossio-Diaz
  • Login: cossio
  • Kind: user

GitHub Events

Total
  • Delete event: 7
  • Issue comment event: 3
  • Pull request event: 8
  • Create event: 4
  • Commit comment event: 1
Last Year
  • Delete event: 7
  • Issue comment event: 3
  • Pull request event: 8
  • Create event: 4
  • Commit comment event: 1

Committers

Last synced: over 1 year ago

All Time
  • Total Commits: 48
  • Total Committers: 4
  • Avg Commits per committer: 12.0
  • Development Distribution Score (DDS): 0.521
Past Year
  • Commits: 8
  • Committers: 3
  • Avg Commits per committer: 2.667
  • Development Distribution Score (DDS): 0.625
Top Committers
Name Email Commits
cossio j****z@g****m 23
Jorge FdCD c****o 16
dependabot[bot] 4****] 6
Jorge FdCD j****d@i****m 3

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 1
  • Total pull requests: 61
  • Average time to close issues: less than a minute
  • Average time to close pull requests: 14 days
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 8.0
  • Average comments per pull request: 0.66
  • Merged pull requests: 8
  • Bot issues: 0
  • Bot pull requests: 61
Past Year
  • Issues: 0
  • Pull requests: 17
  • Average time to close issues: N/A
  • Average time to close pull requests: 18 days
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.47
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 17
View more stats
Top Authors
Issue Authors
  • JuliaTagBot (1)
Pull Request Authors
  • dependabot[bot] (61)
Top Labels
Issue Labels
Pull Request Labels
dependencies (61) github_actions (3)

Packages

  • Total packages: 1
  • Total downloads: unknown
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 13
juliahub.com: Rfam
  • Versions: 13
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 9.9%
Average: 38.8%
Dependent packages count: 38.9%
Stargazers count: 52.9%
Forks count: 53.5%
Last synced: 10 months ago

Dependencies

.github/workflows/ci.yml actions
  • actions/checkout v2 composite
  • julia-actions/julia-buildpkg latest composite
  • julia-actions/julia-runtest latest composite
  • julia-actions/julia-uploadcodecov latest composite
  • julia-actions/setup-julia v1 composite