precisionnutrition

Studies related to individual responses to particular diets

https://github.com/bridgeslab/precisionnutrition

Science Score: 75.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
Found CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
Found 9 DOI reference(s) in README
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Academic publication links
Links to: zenodo.org
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Academic email domains
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Institutional organization owner
Organization bridgeslab has institutional domain (bridgeslab.sph.umich.edu)
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (10.1%) to scientific vocabulary

Last synced: 6 months ago · JSON representation ·

Repository

Studies related to individual responses to particular diets

Basic Info

Host: GitHub
Owner: BridgesLab
License: other
Language: HTML
Default Branch: main
Size: 1.9 GB

Statistics

Stars: 0
Watchers: 5
Forks: 0
Open Issues: 9
Releases: 2

Created almost 4 years ago · Last pushed 6 months ago

Metadata Files

Readme License Citation

Precision Nutrition Datasets

Precision Nutrition Studies

This repository contains raw data for studies done by the Bridges Lab and our collaborators on precision nutrition approaches. This repository contains the data for the manuscripts detailed below. The tag column refers the state of the dataset at the indicated time of the manuscript's publishing:

| Publication | Dataset | Tag | |-------------|---------|-----| | Cousineau, C.M., K. Loftus, G.D. Churchill, and D. Bridges. Cross-sectional association between blood cholesterol and calcium levels in genetically diverse strains of mice. 2023. FEBS Open 14: 426-433 doi: http://dx.doi.org/10.1002/2211-5463.13757| | 1.0.0 |

Struture of this Repository

In general data are provided in raw form, with a R script (as a Rmd file) that analyses the data, generating html and md outputs along with figures. There are several subfolders to this repository:

Manuscripts: Contains all text and image files for the manuscript. See the README file in each folder to identify the location of underlying files and scripts

Mouse Genetics: Contains mouse data including analysis and figure generation scripts.

Meta Analysis: Contains meta-analyses, generally of human data

Licence

This PrecisionNutrition data is made available under the Open Data Commons Attribution License: http://opendatacommons.org/licenses/by/1.0. For more information see LICENSE

Owner

Name: Bridges Lab
Login: BridgesLab
Kind: organization
Email: lab.bridges@gmail.com
Location: Ann Arbor, MI

Website: bridgeslab.sph.umich.edu
Repositories: 20
Profile: https://github.com/BridgesLab

Citation (CITATION.cff)

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: Bridges Lab Precision Nutrition Dataset
message: >-
  If you use these data please cite Cousineau et al. 2023
type: dataset
authors:
  - given-names: Dave
    family-names: Bridges
    email: davebrid@umich.edu
    affiliation: University of Michigan School of Public Health
    orcid: 'https://orcid.org/0000-0002-5334-972X'
  - given-names: Cody
    family-names: Cousineau
    email: ccousz@umich.edu
    affiliation: University of Michigan School of Public Health
    orcid: 'https://orcid.org/0000-0003-0168-5083'
  - given-names: Kaelin
    family-names: Loftus
    email: loftusk@umich.edu
    affiliation: University of Michigan School of Public Health
    orcid: 'https://orcid.org/0000-0001-8045-9169'
  - given-names: Gary
    name-particle: A.
    family-names: Churchill
    orcid: 'https://orcid.org/0000-0001-9190-9284'
    affiliation: The Jackson Laboratories
identifiers:
  - type: doi
    value: 10.1101/2023.02.08.527123
    description: BioRxiv Preprint
  - type: doi
    value: 10.5281/zenodo.10408266
    description: Zenodo archive (v1.0.0).
repository-code: 'https://github.com/BridgesLab/PrecisionNutrition'
url: 'http://bridgeslab.sph.umich.edu'
abstract: >-
  This dataset contains analysis code and data for human and
  mouse studies related to precision nutrition by the
  Bridges laboratory at the University of Michigan School of
  Public Health.  There is one peer-reviewed publication
  arising from these data, describing the cross-sectional
  association between calcium and cholesterol in diversity
  outbred mice.
keywords:
  - calcium
  - cholesterol
  - nutrition
  - precision nutrition
  - metabolism
  - genetics
license: ODC-By
commit: bcd5da1
version: 1.0.0
date-released: '2023-12-19'

GitHub Events

Total

Issues event: 9
Issue comment event: 1
Push event: 17

Last Year

Issues event: 9
Issue comment event: 1
Push event: 17

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 3
Total pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Total issue authors: 1
Total pull request authors: 0
Average comments per issue: 0.0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 3
Pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 1
Pull request authors: 0
Average comments per issue: 0.0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

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