https://github.com/csbg/tfcf

Systematic functional screening of chromatin factors identifies strong lineage and disease dependencies in normal and malignant haematopoiesis.

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CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
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DOI references
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Academic publication links
Links to: zenodo.org
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (4.7%) to scientific vocabulary

Last synced: 6 months ago · JSON representation

Repository

Systematic functional screening of chromatin factors identifies strong lineage and disease dependencies in normal and malignant haematopoiesis.

Created about 5 years ago · Last pushed about 1 year ago

Readme

This repository contains the code to analyze the data from the manuscript.

src: Code for the analyses of FACS-based and Perturb-seq CRISPR screens. This folder contains a separate README file describing how to run the code.
metadata: Tables and annotations required for the analysis.
lockfiles: archived renv lockfiles
misc: archived scripts not required for the analysis
ATAC_ChIP: Code to analyze epigenomics datasets. This folder contains a separate README file that describes how to run the code.
CRISPR: Code to generate count matrices from FACS based CRISPR datasets. This folder contains a separate README file that describes how to run the code.
cellRanger: Code to generate CellRanger's output from Perturb-seq data. This folder contains a separate README file that describes how to run the code.