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Open Source Science

https://github.com/csinva/glaucoma-diagnosis

Code for diagnosing glaucoma from Lumos lens

https://github.com/csinva/glaucoma-diagnosis

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 3 committers (33.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.4%) to scientific vocabulary

Keywords

computer glaucoma-diagnosis tensorflow vision
Last synced: 5 months ago · JSON representation

Repository

Code for diagnosing glaucoma from Lumos lens

Basic Info
  • Host: GitHub
  • Owner: csinva
  • Language: Python
  • Default Branch: master
  • Size: 24.4 KB
Statistics
  • Stars: 7
  • Watchers: 6
  • Forks: 3
  • Open Issues: 0
  • Releases: 0
Topics
computer glaucoma-diagnosis tensorflow vision
Created over 8 years ago · Last pushed over 6 years ago
Metadata Files
Readme

README.md

glaucoma_diagnosis

Code for diagnosing glaucoma from Lumos lens

current goals

  • set up network for classification

data

  • 1070 glaucoma images
  • 180 non-glaucoma images
  • data sources
    • hrf: https://www5.cs.fau.de/research/data/fundus-images/
    • ...

future

  • larger dataset
  • use actual lumos lens
  • categorize different features (like cup size, etc.) and classify with those

previous work

  • review: https://dspace.lboro.ac.uk/dspace-jspui/bitstream/2134/20268/3/Muh%2BCMIG-Review2014-accepted.pdf
  • previous NN paper: http://journals.lww.com/glaucomajournal/Abstract/2007/01000/TrainedArtificialNeuralNetworkfor_Glaucoma.4.aspx
  • poster - http://www.oic.it/~egscopenaghen2012/posters/june19/P4.58/poster.pdf

Install

Ensure you a version of Python in the 2.7-3.6 range installed, then run:

pip install -r requirements.txt

Owner

  • Name: Chandan Singh
  • Login: csinva
  • Kind: user
  • Location: Microsoft research
  • Company: Senior researcher

Senior researcher @Microsoft interpreting ML models in science and medicine. PhD from UC Berkeley.

GitHub Events

Total
Last Year

Committers

Last synced: 8 months ago

All Time
  • Total Commits: 10
  • Total Committers: 3
  • Avg Commits per committer: 3.333
  • Development Distribution Score (DDS): 0.4
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Chandan Singh c****h@b****u 6
Shalin Shah s****s@g****m 3
Samuel Marks 8****s 1
Committer Domains (Top 20 + Academic)
berkeley.edu: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 0
  • Total pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: 1 minute
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • SamuelMarks (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

requirements.txt pypi
  • h5py *
  • keras *
  • matplotlib *
  • numpy *
  • pillow *
  • scipy *
  • sklearn *
  • tensorflow *
  • torch *
  • torchvision *