https://github.com/cthoyt/vsmo
Revival of the Vector Surveillance and Management Ontology
Science Score: 36.0%
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Found 3 DOI reference(s) in README -
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Low similarity (8.4%) to scientific vocabulary
Repository
Revival of the Vector Surveillance and Management Ontology
Basic Info
- Host: GitHub
- Owner: cthoyt
- License: bsd-3-clause
- Default Branch: main
- Size: 921 KB
Statistics
- Stars: 1
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 2
Metadata Files
README.md
vsmo
This repository revives the Vector Surveillance and Management Ontology, sourced from https://code.google.com/archive/p/vector-surveillance-and-management-ontology/downloads under the BSD-3-Clause License. This ontology was originally published accompanying:
Ontology for Vector Surveillance and Management
Saul Lozano-Fuentes, Aritra Bandyopadhyay, Lindsay G Cowell, Albert Goldfain, and Lars Eisen
pubmed:23427646, doi:10.1603/ME12169
vsmo.obo in this repository corresponds to an updated version of the
0.0.17 release.
that can now be parsed with ROBOT.
See additional information on the Bioregistry: https://bioregistry.io/vsmo
Contributing
Edit vsmo.obo and then the following commands can be used to sync the OWL and JSON files:
shell
robot convert -i vsmo.obo -o vsmo.owl
robot convert -i vsmo.obo -o vsmo.json
Original README Text
Note on changes in the VSMO upper classes from the paper published in the Journal of Medical Entomology on the VSMO (Lozano-Fuentes et al.. 2013. Ontology for vector surveillance and management. Journal of Medical Entomology 50: 1-14)
With the addition of the Basic Formal Ontology framework (BFO 1.1; http://www.ifomis.org/bfo) to the VSMO, the location of the upper classes presented in the 2013 Journal of Medical Entomology publication on the VSMO has changed (see figure at "http://vector-surveillance-and-management-ontology.googlecode.com/svn/wiki/bfo_root.png" for a guide to navigate to these upper classes in the new VSMO structure).
Using the child-parent analogy: Most of the terms in the VSMO are of type " object", which now, together with "objectaggregate", are children of " materialentity".
The class "quality" is now a child of "specificallydependentcontinuant".
The classes "disposition", "function" and "role" are now children of " realizable_entity".
The term "process" is now a child of "processual_entity".
The term "temporalinteval" is a child of "connectedtemporal_region".
Owner
- Name: Charles Tapley Hoyt
- Login: cthoyt
- Kind: user
- Location: Bonn, Germany
- Company: RWTH Aachen University
- Website: https://cthoyt.com
- Repositories: 489
- Profile: https://github.com/cthoyt
GitHub Events
Total
Last Year
Committers
Last synced: about 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Charles Tapley Hoyt | c****t@g****m | 10 |
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Last synced: over 1 year ago
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Past Year
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- Average comments per issue: 0
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