https://github.com/cthoyt/cx-rdf
A Python utility for converting CX to RDF
Science Score: 13.0%
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○CITATION.cff file
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✓codemeta.json file
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○.zenodo.json file
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○Scientific vocabulary similarity
Low similarity (5.1%) to scientific vocabulary
Keywords
cx
cytoscape
ndex
ndex-python-client
rdf
semantic-web
Last synced: 6 months ago
·
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Repository
A Python utility for converting CX to RDF
Basic Info
Statistics
- Stars: 0
- Watchers: 2
- Forks: 1
- Open Issues: 4
- Releases: 0
Topics
cx
cytoscape
ndex
ndex-python-client
rdf
semantic-web
Created over 7 years ago
· Last pushed over 7 years ago
Metadata Files
Readme
License
README.rst
CX-RDF
======
A utility for converting CX to RDF.
Installation
------------
This module has not yet been pushed to PyPI. It can be downloaded and installed from GitHub using Python.
.. code-block:: sh
$ python3 -m pip install git+https://github.com/cthoyt/cx_rdf.git
or installed in editable mode like:
.. code-block:: sh
$ git clone https://github.com/cthoyt/cx-rdf.git
$ cd cx-rdf
$ python3 -m pip install -e .
Command Line Usage
------------------
The setup.py installs two commands:
``cx_to_rdf`` converts CX documents to RDF using one of three policies:
- abstract: RDF is used to represent CX itself, and does not take intuition from the content of CX. This is verbose,
but most extensible
- aspect: Each aspect is converted individually with some knowledge of the biological meaning of each
- predicate: RDF is produced that captures the schema of networks most closely
``owl_to_cx`` is a rudimentary OWL to CX converter that captures ``subClassOf`` relationships.
Owner
- Name: Charles Tapley Hoyt
- Login: cthoyt
- Kind: user
- Location: Bonn, Germany
- Company: RWTH Aachen University
- Website: https://cthoyt.com
- Repositories: 489
- Profile: https://github.com/cthoyt
GitHub Events
Total
Last Year
Issues and Pull Requests
Last synced: 12 months ago
All Time
- Total issues: 6
- Total pull requests: 1
- Average time to close issues: 6 days
- Average time to close pull requests: N/A
- Total issue authors: 1
- Total pull request authors: 1
- Average comments per issue: 0.17
- Average comments per pull request: 1.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- cthoyt (6)
Pull Request Authors
- agary-ucsd (1)
Top Labels
Issue Labels
question (1)
Pull Request Labels
Dependencies
requirements-rtfd.txt
pypi
- click *
- ndex2 *
- owlready2 *
- rdflib *
- sphinx-click *
requirements.txt
pypi
- click *
- ndex2 *
- owlready2 *
- rdflib *