https://github.com/cthoyt/wikipathways-map
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.8%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: cthoyt
- Language: Python
- Default Branch: main
- Size: 700 KB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
wikipathways-map
This repository contains several python scripts to build a network of relations between WikiPathways pathways and external vocabularies.
Presentation given to WikiPathways Developer Conference Call on January 6th, 2021: http://bit.ly/3neYZ5O
Data
| File | Description | | ---- | ----------- | | biomappings_subset.tsv | Manually curated relationships from Biomappings relvant for WikiPathways | | compath_subset.tsv | Manually curated relationships from ComPath relvant for WikiPathways | | diseases.tsv | WikiPathway toDOID relationships extracted from WikiPathways SPARQL endpoint | | pw.tsv | WikiPathway to Pathway Ontology relationships extracted from WikiPathways SPARQL endpoint | | orthologs.tsv | Orthologous pathways inside WikiPathways generated by lexical matching with Gilda |
Licensing
- Data from Biomappings are licensed under the CC-0 license.
- Data from ComPath are licensed under the MIT License.
- Data from WikiPathways are licensed under the CC-0 license.
- Original data in this repo are licensed under the CC-0 license.
- Code in this repo is licensed under the MIT License.
Visualization
The network can be viewed on NDEx.
Sources
Build
The code can be run with tox based on the tox.ini file to automatically acquire, build, and upload the resources to
NDEx.
Owner
- Name: Charles Tapley Hoyt
- Login: cthoyt
- Kind: user
- Location: Bonn, Germany
- Company: RWTH Aachen University
- Website: https://cthoyt.com
- Repositories: 489
- Profile: https://github.com/cthoyt
GitHub Events
Total
Last Year
Committers
Last synced: almost 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Charles Tapley Hoyt | c****t@g****m | 13 |
Issues and Pull Requests
Last synced: about 1 year ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0