https://github.com/cthoyt/obook

OBO Organized Knowlegde

https://github.com/cthoyt/obook

Science Score: 18.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
  • .zenodo.json file
  • DOI references
  • Academic publication links
  • Academic email domains
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (9.0%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

OBO Organized Knowlegde

Basic Info
  • Host: GitHub
  • Owner: cthoyt
  • License: cc0-1.0
  • Language: Makefile
  • Default Branch: master
  • Size: 58.8 MB
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  • Watchers: 2
  • Forks: 0
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Fork of OBOAcademy/obook
Created almost 5 years ago · Last pushed over 2 years ago
Metadata Files
Readme Contributing License Citation

README.md

Open Biological and Biomedical Ontologies (OBO) Organized Knowledge (OBOOK)

The OBOOK is the main resource for OBOAcademy training materials for Semantic OBO Engineers.

  • To get started with learning: https://oboacademy.github.io/obook/getting-started/
  • To contribute: https://oboacademy.github.io/obook/contributing/

Running the website locally

Installing dependencies

```bash

Create a virtual environment in the project folder

python -m venv .venv

Activate the virtual environment

in mac/linux

source .venv/bin/activate

in Windows

..venv\Scripts\activate

Install dependencies

pip install mkdocs pip install mkdocs-material ```

Running the site locally

If you haven't, activate the local virtual environment

```bash

in mac/linux

source .venv/bin/activate

in Windows

..venv\Scripts\activate ```

Then run:

mkdocs serve

Go to http://127.0.0.1:8000/, you should see the site.

License

This content is available under the Creative Commons CC0 Public Domain Dedication.

Acknowledgements

Critical Path Institute

Critical Path Institute (CPI) is an independent, nonprofit organisation dedicated to bringing together experts from regulatory agencies, industry, and academia to collaborate and improve the medical product development process.

In April 2021, the CPI has commissioned the first version of this OBO course, contributing not only funding for the preparation and delivery of the materials, but also valuable feedback about the course contents and data for the practical exercises. We thank the CPI for contributing significantly to the OBO community and open science!

https://c-path.org/

Owner

  • Name: Charles Tapley Hoyt
  • Login: cthoyt
  • Kind: user
  • Location: Bonn, Germany
  • Company: RWTH Aachen University

Citation (CITATION.cff)

title: 'OBO Academy: Training materials for bio-ontologists'
doi: 10.5281/zenodo.6955490
repository-code: https://github.com/OBOAcademy/obook
date-released: 2022-08-02
cff-version: 1.2.0

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