multiscale_spatial_image - multiscale-spatial-image 2.0.3

What's Changed

• zarr 3 by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/108
• ENH: Bump version to 2.0.3 by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/110

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v2.0.2...v2.0.3

- Python
Published by thewtex 7 months ago

multiscale_spatial_image - v2.0.2

What's Changed

• update readme example to new xarray by @melonora in https://github.com/spatial-image/multiscale-spatial-image/pull/102
• Add operations to multiscale spatial image by @melonora in https://github.com/spatial-image/multiscale-spatial-image/pull/103

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v2.0.1...v2.0.2

- Python
Published by melonora over 1 year ago

multiscale_spatial_image - Multiscale-spatial-image v2.0.1

What's Changed

• drop python.3.13 by @melonora in https://github.com/spatial-image/multiscale-spatial-image/pull/98
• BUG: download test data from GitHub Releases by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/99
• BUG: Remove Python 3.8 conditions in test.yml by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/96
• Add decorator for skipping nodes without dimension by @melonora in https://github.com/spatial-image/multiscale-spatial-image/pull/101 This allows for applying functions over all datasets in the MultiscaleSpatialImage DataTree that contain dimensions. See the README for an example.

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v2.0.0...v2.0.1

- Python
Published by melonora over 1 year ago

multiscale_spatial_image - Multiscale-spatial-image v2.0.0

What's Changed

• adjust to xarray datatree by @melonora in https://github.com/spatial-image/multiscale-spatial-image/pull/94

The library datatree has been archived. Xarray now includes DataTree directly. Some changes to the datamodel have been made. In short dimensions and indexes in child nodes should exactly align with those in their parents. However, for MultiscaleSpatialImage this does not seem to be the case as the root node does not contain dimensions while the child nodes do. According to migration guide the dimensions and indexes of sibling nodes do not have to align.

On top of these changes the DataTree has certain methods removed. The behaviour of these methods can be replicated (in particular when adjusting dimensions or reindexing) by writing a decorator that takes a xr.Dataset and skips over the nodes that contain dims of length 0. One can then apply map_over_datasets. For documentation, see here.

New Contributors

• @melonora made their first contribution in https://github.com/spatial-image/multiscale-spatial-image/pull/94

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v1.0.1...v2.0.0

- Python
Published by melonora over 1 year ago

multiscale_spatial_image - multiscale-spatial-image 1.0.1

What's Changed

• BUG: Add zarr to package dependencies by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/86
• pixi conf by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/87
• ENH: Add Python 3.12 to CI testing by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/83
• ENH: Add macOS ARM support in CI by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/84
• pixi notebooks by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/88
• BUG: Pass mode to to_zarr superclass method by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/69
• pyimagej bump by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/89
• pre commit by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/90
• BUG: Use mode='w' fro pyimagej notebook by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/91

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v1.0.0...v1.0.1

- Python
Published by thewtex over 1 year ago

multiscale_spatial_image - multiscale-spatial-image 1.0.0

What's Changed

• BUG: Remove IPFS daemon from CI setup by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/82
• datatree accessor to multiscale spatial image by @giovp in https://github.com/spatial-image/multiscale-spatial-image/pull/81

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v0.11.2...v1.0.0

- Python
Published by thewtex over 2 years ago

multiscale_spatial_image - multiscale-spatial-image 0.11.2

What's Changed

• DOC: Specify to_zarr store type by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/68
• BUG: Bump itk version dep for 5.3.0 by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/72
• ENH: Update CI to include testing for Python 3.11 by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/75
• list downsampling methods in docstring of to_multiscale by @giovp in https://github.com/spatial-image/multiscale-spatial-image/pull/74
• raise error for invalid scale factors by @giovp in https://github.com/spatial-image/multiscale-spatial-image/pull/73

New Contributors

• @giovp made their first contribution in https://github.com/spatial-image/multiscale-spatial-image/pull/74

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v0.11.1...v0.11.2

- Python
Published by thewtex about 3 years ago

multiscale_spatial_image - multiscale-spatial-image 0.11.1

What's Changed

• BUG: Fix downsampled scale dim order with dask-image resampling by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/67

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v0.11.0...v0.11.1

- Python
Published by thewtex over 3 years ago

multiscale_spatial_image - multiscale-spatial-image 0.11.0

What's Changed

• Refactor by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/62
• Dask image label by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/66

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v0.10.1...v0.11.0

- Python
Published by thewtex over 3 years ago

multiscale_spatial_image - multiscale-spatial-image 0.10.1

What's Changed

• Extras by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/61
• Update multiscalespatialimage.py by @dzenanz in https://github.com/spatial-image/multiscale-spatial-image/pull/56

New Contributors

• @dzenanz made their first contribution in https://github.com/spatial-image/multiscale-spatial-image/pull/56

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v0.10.0...v0.10.1

- Python
Published by thewtex over 3 years ago

multiscale_spatial_image - multiscale-spatial-image 0.10.0

What's Changed

• Pytest web3 data by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/59
• ENH: Migrate to hatch for packaging by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/60

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v0.9.0...v0.10.0

- Python
Published by thewtex over 3 years ago

multiscale_spatial_image - multiscale-spatial-image 0.9.0

What's Changed

• ENH: Add a multiscalespatialimage_version entry to .zattrs by @PaulHax in https://github.com/spatial-image/multiscale-spatial-image/pull/47
• Label image gaussian by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/50
• ENH: And Convert Tiff File with OME-NGFF Zarr output by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/32

New Contributors

• @PaulHax made their first contribution in https://github.com/spatial-image/multiscale-spatial-image/pull/47

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v0.8.0...v0.9.0

- Python
Published by thewtex over 3 years ago

multiscale_spatial_image - multiscale-spatial-image 0.8.0

What's Changed

• dask image gaussian by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/45
• ENH: Add itk_image_to_multiscale method by @tbirdso in https://github.com/spatial-image/multiscale-spatial-image/pull/46

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v0.7.0...v0.8.0

- Python
Published by thewtex almost 4 years ago

multiscale_spatial_image - multiscale-spatial-image 0.7.0

What's Changed

• citation cff by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/43
• ENH: Add DASKGAUSSIAN scaling and fix ITKGAUSSIAN by @tbirdso in https://github.com/spatial-image/multiscale-spatial-image/pull/40

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v0.6.0...v0.7.0

- Python
Published by thewtex almost 4 years ago

multiscale_spatial_image - multiscale-spatial-image 0.6.0

What's Changed

• DOC: Add DOI Zenodo badge by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/22
• Testing itk version by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/24
• DOC: Add imageio example by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/26
• ENH: Used published ngff schema by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/27
• ENH: Update pip install command in CI by @tbirdso in https://github.com/spatial-image/multiscale-spatial-image/pull/30
• ENH: Cache test data for notebook CI tests by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/33
• ENH: Add ConvertPyImageJ example by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/23
• ENH: Rename to multiscale-spatial-image by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/35
• DOC: Add link to PyImageJ example by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/37
• DOC: Document how to add new testing data by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/36
• ENH: Add ITK_GAUSSIAN generation option by @tbirdso in https://github.com/spatial-image/multiscale-spatial-image/pull/31
• ENH: Connect to ipfs content providers in CI by @thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/38

New Contributors

• @tbirdso made their first contribution in https://github.com/spatial-image/multiscale-spatial-image/pull/30

Full Changelog: https://github.com/spatial-image/multiscale-spatial-image/compare/v0.4.1...v0.6.0

- Python
Published by thewtex almost 4 years ago

multiscale_spatial_image - spatial-image-multiscale 0.4.1

What's Changed

• convert itk by @thewtex in https://github.com/spatial-image/spatial-image-multiscale/pull/21

Full Changelog: https://github.com/spatial-image/spatial-image-multiscale/compare/v0.4.0...v0.4.1

- Python
Published by thewtex almost 4 years ago

multiscale_spatial_image - spatial-image-multiscale 0.4.0

What's Changed

• ENH: Add notebook CI testing by @thewtex in https://github.com/spatial-image/spatial-image-multiscale/pull/17
• ENH: Add NGFF 0.4 JSON Schema validation test by @thewtex in https://github.com/spatial-image/spatial-image-multiscale/pull/18
• scale node name by @thewtex in https://github.com/spatial-image/spatial-image-multiscale/pull/19
• Basic docs by @thewtex in https://github.com/spatial-image/spatial-image-multiscale/pull/20

Full Changelog: https://github.com/spatial-image/spatial-image-multiscale/compare/v0.3.1...v0.4.0

- Python
Published by thewtex almost 4 years ago

multiscale_spatial_image - spatial-image-multiscale 0.3.1

What's Changed

• default method by @thewtex in https://github.com/spatial-image/spatial-image-multiscale/pull/15

Full Changelog: https://github.com/spatial-image/spatial-image-multiscale/compare/v0.3.0...v0.3.1

- Python
Published by thewtex almost 4 years ago

multiscale_spatial_image - spatial-image-multiscale 0.3.0

What's Changed

• WIP: ENH: MultiscaleSpatialImage is an xarray DataTree by @thewtex in https://github.com/spatial-image/spatial-image-multiscale/pull/10
• zarr on demand by @thewtex in https://github.com/spatial-image/spatial-image-multiscale/pull/11

Full Changelog: https://github.com/spatial-image/spatial-image-multiscale/compare/v0.2.0...v0.3.0

- Python
Published by thewtex almost 4 years ago

multiscale_spatial_image - spatial-image-multiscale 0.1.0

- Python
Published by thewtex over 4 years ago