vcfexpress - v0.3.5

• add logging of number of variants/second and number of variants written.
• add example of groups
• update to mlua 0.10.3
• better error reporting

Full Changelog: https://github.com/brentp/vcfexpress/compare/v0.3.4...v0.3.5

- Rust
Published by brentp about 1 year ago

vcfexpress - v0.3.4

• Add floats to sample extracted from variant:sample("MY-SAMPLE")
• Expose read-only header during variant evaluation
• add samples = variant:samples() to get all samples and then use as, e.g. lua samples = variant:samples() samples.NA12878.alts == 1 and samples.NA12879.alts == 0 and samples.NA12878.DP > 20 -- to only include some fields. here fields other than `DP` and `GT` are ignored samples = variant:samples({DP=true})

Full Changelog: https://github.com/brentp/vcfexpress/compare/v0.3.3...v0.3.4

- Rust
Published by brentp about 1 year ago

vcfexpress - docs and minor usability improvements

Please see the attached linux binary or see the readme for build instructions.

Full Changelog: https://github.com/brentp/vcfexpress/compare/v0.3.2...v0.3.3

- Rust
Published by brentp about 1 year ago

vcfexpress - first public release

Get a static linux binary below or build with cargo.

Full Changelog: https://github.com/brentp/vcfexpress/compare/v0.3.1...v0.3.2

- Rust
Published by brentp over 1 year ago

vcfexpress - initial release

this release contains tested, working code. Error messages may be a bit cryptic from lua code. Linux binary is provided. Download, chmod +x and run vcfexpr filter

- Rust
Published by brentp almost 2 years ago