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https://github.com/cumbof/open-omics-api

A open-source framework for organising multi-omics data from heterogeneous data sources

https://github.com/cumbof/open-omics-api

Science Score: 39.0%

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    CITATION.cff file
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    Found 4 DOI reference(s) in README
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    Low similarity (6.7%) to scientific vocabulary

Keywords

api data-integration data-management genomics mongodb omics
Last synced: 5 months ago · JSON representation

Repository

A open-source framework for organising multi-omics data from heterogeneous data sources

Basic Info
  • Host: GitHub
  • Owner: cumbof
  • Language: Python
  • Default Branch: master
  • Homepage:
  • Size: 68.4 KB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 2
  • Releases: 0
Archived
Topics
api data-integration data-management genomics mongodb omics
Created about 7 years ago · Last pushed almost 5 years ago
Metadata Files
Readme

README.md

Open-Omics APIs

We propose design principles for organizing biomedical data and make them easily accessible through the development of a collection of Application Programming Interfaces (APIs), in order to provide a flexible framework that we called OpenOmics. To prove the validity of our approach, we apply it on data extracted from The Genomic Data Commons repository. OpenOmics is free and open source for allowing everyone to extend the set of provided APIs with new features that may be able to answer specific biological questions.

OpenOmics is available at http://bioinformatics.iasi.cnr.it/openomics/api/routes

Credits

Please credit OpenOmics in your manuscript by citing:

Eleonora Cappelli, Emanuel Weitschek, and Fabio Cumbo. "Smart Persistence and Accessibility of Genomic and Clinical Data." International Conference on Database and Expert Systems Applications. Springer, Cham, 2019. https://doi.org/10.1007/978-3-030-27684-3_2

Owner

  • Name: Fabio Cumbo
  • Login: cumbof
  • Kind: user
  • Location: Cleveland, OH, USA
  • Company: Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic

Ph.D. in Computer Science and Automation Engineering, Postdoctoral Research Fellow @BlankenbergLab, GMI, LRI, Cleveland Clinic, USA

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