https://github.com/cvxgrp/torch_linops

A library to define abstract linear operators, and associated algebra and matrix-free algorithms, that works with pyTorch Tensors.

https://github.com/cvxgrp/torch_linops

Science Score: 33.0%

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Keywords

linear-algebra matrix pytorch
Last synced: 9 months ago · JSON representation

Repository

A library to define abstract linear operators, and associated algebra and matrix-free algorithms, that works with pyTorch Tensors.

Basic Info
  • Host: GitHub
  • Owner: cvxgrp
  • License: apache-2.0
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 73.2 KB
Statistics
  • Stars: 14
  • Watchers: 6
  • Forks: 1
  • Open Issues: 0
  • Releases: 5
Topics
linear-algebra matrix pytorch
Created about 4 years ago · Last pushed over 1 year ago
Metadata Files
Readme License

README.md

An Abstract Linear Operator Library for pyTorch

This library implements a generic structure for abstract linear operators and enables a number of standard operations on them: * Arithmetic: A + B, A - B, -A, A @ B all work exactly as expected to combine linear operators. * Indexing: A[k:ell,m:n] works as expected. * Solves: Ax = b can be solved with CG for PSD matrices, minres for symmetric matrices, LSQR (to be implemented), or LSMR (to be implemented). * Trace estimation: The trace of square matrices, can be estimated via Hutch++ and Hutchinson's estimator. * Diamond-Boyd stochastic equilibration * Randomized Nyström Preconditioning * Automatic adjoint operator generation.

Using LinearOperators

The public API of the LinearOperator library is that every LinearOperator has the following properties and methods: ```python

class LinearOperator:

# Properties
shape: tuple[int, int]
T: LinearOperator
supports_operator_matrix: bool
device: torch.Device

# Matrix multiply
def __matmul__(self, b: torch.Tensor) -> torch.Tensor: ...
def __rmatmul__(self, b: torch.Tensor) -> torch.Tensor: ...

def __matmul__(self, b: LinearOperator) -> LinearOperator: ...
def __rmatmul__(self, b: LinearOperator) -> LinearOperator: ...

# Linear Solve Methods
def solve_I_p_lambda_AT_A_x_eq_b(self,
    lambda_: float,
    b: torch.Tensor,
    x0: torch.Tensor | None=None,
    *, precondition: None | Literal['nsytrom'], hot=False) -> torch.Tensor: ...

def solve_A_x_eq_b(self,
    b: torch.Tensor,
    x0: torch.Tensor | None=None) -> torch.Tensor: ...

# Transformations on LinearOperator
def __mul__(self, c: float) -> LinearOperator: ...
def __rmul__(self, c: float) -> LinearOperator: ...

def __truediv__(self, c: float) -> LinearOperator: ...

def __pow__(self, k: int) -> LinearOperator: ...

def __add__(self, c: LinearOperator) -> LinearOperator: ...

def __sub__(self, c: LinearOperator) -> LinearOperator: ...

def __neg__(self) -> LinearOperator: ...

def __pos__(self) -> LinearOperator: ...

def __getitem__(self, key) -> LinearOperator: ...

```

The following functions are available in the root of the library: ```python def operatormatrixproduct(A: LinearOperator, M: torch.Tensor) -> torch.Tensor: ... def aslinearoperator(A: torch.Tensor | LinearOperator) -> LinearOperator: ... def vstack(ops: list[LinearOperator] | tuple[LinearOperator, ...]) -> LinearOperator: ... def hstack(ops: list[LinearOperator] | tuple[LinearOperator, ...]) -> LinearOperator: ...

To be implemented:

def bmat(ops: list[list[LinearOperator]]) -> LinearOperator: ... # Optimizes out ZeroOperator ```

The following functions are available in linops.trace for trace estimation: python def hutchpp(A: lo.LinearOperator, m: int) -> float: ... def hutchinson(A: lo.LinearOperator, m: int) -> float: ...

linops.equilibration contains equilibrate and symmetric_equilibrate. Their public API is not finalized, if you wish to use them it is recommend you read the source code.

Creating Linear Operators

Linear operators can be constructed in the following way: * Creating a sub-class of LinearOperator * Calling one of the following constructors: * IdentityOperator(n: int) * DiagonalOperator(diag: torch.Tensor): where diag is a 1D torch tensor. * MatrixOperator(M: torch.Tensor): where M is a 2D torch tensor. * SelectionOperator(shape: tuple[int, int], idxs: slice | list[int | slice]) * KKTOperator(H: LinearOperator, A: LinearOperator): where H is a square LinearOperator and A is a LinearOperator * VectorJacobianOperator(f: torch.Tensor, x: torch.Tensor): where f is the output of the function being differentiated which has a torch autograd value and x is the vector on which ensures_grad was called. * ZeroOperator(shape: tuple[int, int]) * Combining operators via: * A + B, A - B, A @ B for A, B linear operators * hstack, vstack * A, c A, A / c, v * A, A / v for scalar c and vector v.

Implementing LinearOperators

To implement a LinearOperator the following are mandatory:

  • Set _shape: tuple[int, int] to the shape of the operator.
  • Set device appropriately, if the operator requires vectors to be on a particular device.
  • Implement a method def _matmul_impl(self, v: torch.Tensor) -> torch.Tensor: ... that implements your matrix vector product.

The following are recommended to improve performance:

  • If your _matmul_impl method handles matrix inputs correctly, set supports_operator_matrix: bool to True.
  • If it is possible to describe the adjoint operator, set _adjoint: LinearOperator to point to the adjoint of your operator. If you do not compute this, then one will be autogenerated by differentiating through your _matmul_impl.

It is suggested that, if possible, you replace any other methods with specialized implementations.

Owner

  • Name: Stanford University Convex Optimization Group
  • Login: cvxgrp
  • Kind: organization
  • Location: Stanford, CA

GitHub Events

Total
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  • Watch event: 4
  • Issue comment event: 1
  • Push event: 3
  • Pull request review event: 1
  • Pull request event: 2
  • Fork event: 1
Last Year
  • Create event: 1
  • Issues event: 3
  • Release event: 1
  • Watch event: 4
  • Issue comment event: 1
  • Push event: 3
  • Pull request review event: 1
  • Pull request event: 2
  • Fork event: 1

Committers

Last synced: about 3 years ago

All Time
  • Total Commits: 52
  • Total Committers: 2
  • Avg Commits per committer: 26.0
  • Development Distribution Score (DDS): 0.192
Top Committers
Name Email Commits
Parth Nobel p****l@b****u 42
Thistleman c****6@g****m 10
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 9 months ago

All Time
  • Total issues: 2
  • Total pull requests: 3
  • Average time to close issues: 6 days
  • Average time to close pull requests: 16 days
  • Total issue authors: 1
  • Total pull request authors: 2
  • Average comments per issue: 0.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 2
  • Average time to close issues: 6 days
  • Average time to close pull requests: about 2 hours
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 0.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
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Top Authors
Issue Authors
  • healeyq3 (2)
Pull Request Authors
  • healeyq3 (2)
  • PTNobel (1)
  • Thistleman (1)
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Packages

  • Total packages: 1
  • Total downloads:
    • pypi 24 last-month
  • Total dependent packages: 1
  • Total dependent repositories: 1
  • Total versions: 2
  • Total maintainers: 1
pypi.org: torch-linops

A library to define abstract linear operators, and associated algebra and matrix-free algorithms, that works with pyTorch Tensors.

  • Versions: 2
  • Dependent Packages: 1
  • Dependent Repositories: 1
  • Downloads: 24 Last month
Rankings
Dependent packages count: 4.7%
Stargazers count: 18.5%
Dependent repos count: 21.7%
Average: 22.8%
Forks count: 29.8%
Downloads: 39.4%
Maintainers (1)
Last synced: 9 months ago

Dependencies

requirements.txt pypi
  • scipy *
  • torch *
setup.py pypi
  • scipy *
  • torch *
.github/workflows/build.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v3 composite
  • conda-incubator/setup-miniconda v2 composite
.github/workflows/test.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v3 composite
  • conda-incubator/setup-miniconda v2 composite
pyproject.toml pypi