https://github.com/cwieder/metanetworkintegration
Science Score: 13.0%
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○Scientific vocabulary similarity
Low similarity (6.4%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: cwieder
- Language: Jupyter Notebook
- Default Branch: main
- Size: 0 Bytes
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Network-Based Approaches for Integrating Metabolomics Data from Large-Scale Repositories
Content
This repository contains the following demo notebooks: - COVIDmetabolitemeta_network: Workflow for creating a metabolite-level meta network using COVID studies from the MetaboLights repository - COVIDpathwaynetwork: Workflow for creating a pathway-level meta network using COVID studies from the MetaboLights repository and Reactome pathways - Multistudynetwork: Workflow for creating a metabolite-study bipartite network using selected studies from MetabolomicsWorkbench - Workbenchglobalnetwork: Workflow for creating a global study-study network from MetabolomicsWorkbench
The Studies folder contains data for the COVID case study, originating from MetaboLights. Additional files required to run the notebooks are also provided.
Requirements
Code has been tested using Python 3.12 on a Windows/Linux/MacOS system. Dependencies are listed at the top of each notebook and are available via PyPI.
Owner
- Login: cwieder
- Kind: user
- Location: London, UK
- Company: Imperial College London
- Repositories: 15
- Profile: https://github.com/cwieder
GitHub Events
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- Push event: 11
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Last Year
- Push event: 11
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