GIMS
GIMS: Graphical Interface for Materials Simulations - Published in JOSS (2021)
Science Score: 89.0%
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○CITATION.cff file
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○codemeta.json file
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✓DOI references
Found 1 DOI reference(s) in JOSS metadata -
○Academic publication links
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6 of 10 committers (60.0%) from academic institutions -
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✓JOSS paper metadata
Published in Journal of Open Source Software
Scientific Fields
Repository
GIMS -- Graphical Interface for Materials Simulations -- is an open-source, browser-based toolbox for electronic structure codes. Try it here: [gims.ms1p.org](https://gims.ms1p.org)
Basic Info
- Host: gitlab.com
- Owner: gims-developers
- License: lgpl-2.1
- Default Branch: master
Statistics
- Stars: 7
- Forks: 4
- Open Issues: 42
- Releases: 0
Metadata Files
README.md
GIMS
GIMS (Graphical Interface for Materials Simulations) is a toolbox for electronic structure codes and supports the generation of input files and the analysis of output files. There are the following elemental apps: * Structure Builder: Visualize, create or modify atomic structures. * Control Generator: Set up the numerical Settings for the calculations. * Output Analyzer: Analyze and visualize the output files.
These elemental apps are connected in two workflows: * Simple Calculation: Prepare everything for a single-point calculation and later analyze the results. * Band Structure: Based on your (periodic) structure the k-point path is automatically generated and the input files are set up accordingly.
Currently, GIMS supports the following electronic structure codes: * FHI-aims * Exciting
Documentation
For a complete documentation of the whole project please visit: https://gims-developers.gitlab.io/gims/index.html
Requirements
Python:
| Package | Version | |---------|---------| | ase | 3.20.1 | | flask | 1.1.2 | | spglib | 1.15.0 |
Javascript:
| Package | Version | |---------------------|----------| | chart.js | 3.5.0 | | parcel | 2.0.0 | | regenerator-runtime | 0.13.8 | | three | 0.130.1 |
Quick start commands
To build GIMS two steps are needed:
1. Build the client (javascript) in the gims/client
2. Install the python package in the gims/app folder.
After that the development server from flask can be started and you can run the app locally on your machine.
How to build the client
First, we get into the application client/ folder:
cd gims/client/
Please install all dependencies with:
npm install --production=false
We use the watch command from the parcel bunlder, so we watch the source code and rebuild when necessary. This is activated with:
npm run dev
If you just want to build the client once, please use:
npm run build
The result of this build process is copied to the app/gims/static/ folder.
* WARNING: Depending on the execution environment the parcel command parameter --public-url and the Conf.BASE_FOLDER variable (in the Conf.js code file) could need to be changed.
How to run the application (development)
We use the Flask Python application server. The project User's guide explains quite well how to set up the server and run a application. In short, if you have build the client go to:
cd gims/app/
Install the package with:
pip install .[dev]
and type:
export FLASK_APP=gims
flask run
Now, open the browser and enter the URL:
localhost:5000
You should now see the top-level GIMS interface.
Using Docker
A Dockerfile is provided to build an image that can run a docker container with both the server and client. Run the following from the top-level of the repository:
docker build -t gims .
docker run -p 5000:5000 gims
JOSS Publication
GIMS: Graphical Interface for Materials Simulations
Authors
The NOMAD Laboratory at the Fritz Haber Institute of the Max Planck Society, Berlin, Germany
The NOMAD Laboratory at the Fritz Haber Institute of the Max Planck Society, Berlin, Germany
Institut für Physik and IRIS Adlershof, Humboldt-Universität zu Berlin, Berlin, Germany
Institut für Physik and IRIS Adlershof, Humboldt-Universität zu Berlin, Berlin, Germany
Tags
Computational Materials Science Electronic Structure Theory Density Functional TheoryCommitters
Last synced: 4 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Sebastian Kokott | k****t@f****e | 285 |
| Iker Hurtado | i****r@i****m | 282 |
| Andrey Sobolev | s****v@f****e | 244 |
| Hagen-Henrik Kowalski | h****i@v****e | 23 |
| Yi Yao | y****2@g****m | 12 |
| Marshall McDonnell | m****t@o****v | 4 |
| Hagen-Henrik Kowalski | h****i@h****p | 3 |
| Andrey Sobolev | a****v@g****m | 2 |
| Volker Blum | v****m@d****u | 2 |
| root | r****t@a****e | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 4 months ago
Dependencies
- @babel/core ^7.8.4
- @babel/preset-env ^7.8.4
- @babel/preset-typescript ^7.8.3
- babel-jest ^25.1.0
- babel-preset-env ^1.7.0
- chart.js ^2.9.3
- jest ^25.2.4
- parcel ^2.0.0-rc.0
- regenerator-runtime ^0.13.8
- three ^0.130.1
- ase ==3.21.1
- flask ==1.1.2
- pytest-cov ==2.8.1
- pytest-remotedata ==0.3.2
- spglib ==1.15.0
- sphinx *
- sphinx_rtd_theme *