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Open Source Science

https://github.com/cyclotronresearchcentre/bidsme_containerisation

Bringing BIDSme into a container, then NeuroDesk

https://github.com/cyclotronresearchcentre/bidsme_containerisation

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.6%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Bringing BIDSme into a container, then NeuroDesk

Basic Info
  • Host: GitHub
  • Owner: CyclotronResearchCentre
  • License: gpl-2.0
  • Language: Jupyter Notebook
  • Default Branch: main
  • Size: 168 KB
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created 9 months ago · Last pushed 6 months ago
Metadata Files
Readme License Citation

README.md

BIDSme Containerization Project

This repository contains all the files and configurations necessary to containerize the BIDSme project using Docker and Docker Compose. The goal is to provide a reproducible and portable environment for the BIDSme application, facilitating deployment and development.

Project Overview

BIDSme is a tool designed to simplify working with BIDS-formatted neuroimaging datasets. Containerizing the project ensures that all dependencies and environments are consistent across different machines and platforms.

Repository Structure

  • build/
    Contains Docker-related files, including the Dockerfile and entrypoint script necessary to build the BIDSme Docker image.

  • deploy/
    Contains deployment-related files such as docker-compose.yml and helper scripts like bidsme-prepare.sh to facilitate container orchestration and common workflows.

Getting Started

Please refer to the README files inside the build/ and deploy/ folders for detailed instructions on building the Docker image and deploying the container respectively.

For more information about the BIDSme project itself, visit the BIDSme GitHub repository.

Owner

  • Name: Cyclotron Research Centre
  • Login: CyclotronResearchCentre
  • Kind: organization
  • Email: c.phillips@uliege.be
  • Location: University of Liège, Belgium

In vivo imaging with positron emission tomography and magnetic resonance imaging as well as electrophysiology

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "SPITZ"
  given-names: "Bradley"
title: "BIDSme_containerisation"
version: 1.9.3
date-released: 2025-08-05
url: "https://github.com/CyclotronResearchCentre/BIDSme_containerisation"

GitHub Events

Total
  • Push event: 53
  • Public event: 1
Last Year
  • Push event: 53
  • Public event: 1

Dependencies

build/Dockerfile docker
  • python ${PYTHON_VERSION} build