https://github.com/cytomining/cytominergallery
[Deprecated] A Gallery of Cytominer Vignettes
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
○codemeta.json file
-
○.zenodo.json file
-
○DOI references
-
○Academic publication links
-
✓Committers with academic emails
3 of 4 committers (75.0%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (7.0%) to scientific vocabulary
Keywords
Repository
[Deprecated] A Gallery of Cytominer Vignettes
Basic Info
- Host: GitHub
- Owner: cytomining
- License: other
- Language: R
- Default Branch: master
- Homepage: https://cytomining.github.io/cytominergallery/
- Size: 10 MB
Statistics
- Stars: 1
- Watchers: 2
- Forks: 6
- Open Issues: 5
- Releases: 0
Topics
Metadata Files
README.md
cytominer gallery
Installation
Download this sqlite file into ~/Downloads (required by the vignette single_cell_analysis).
Install the cytominergallery package from GitHub:
```R
install.packages("devtools")
devtools::installgithub("cytomining/cytominergallery", dependencies = TRUE, buildvignettes = TRUE) ```
You may need to do run that again in order to build the vignettes correctly (seems like a bug in install_github):
R
devtools::install_github("cytomining/cytominergallery", dependencies = TRUE, build_vignettes = TRUE, force = TRUE)
Occasionally, the Suggests dependencies may not get installed, depending on your system, so you'd need to install those explicitly.
Browse vignettes (launches in default browser):
R
browseVignettes()
Search for "Vignettes in package cytominergallery" and click on the link HTML to view the vignettes.
Owner
- Name: cytomining
- Login: cytomining
- Kind: organization
- Repositories: 27
- Profile: https://github.com/cytomining
GitHub Events
Total
Last Year
Committers
Last synced: 9 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Shantanu Singh | s****h@b****g | 120 |
| Mohammad Hossein Rohban | m****n@b****g | 20 |
| Tim Becker | t****r@b****g | 1 |
| David Logan | D****n@p****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 9 months ago
All Time
- Total issues: 29
- Total pull requests: 36
- Average time to close issues: about 2 months
- Average time to close pull requests: about 18 hours
- Total issue authors: 6
- Total pull request authors: 4
- Average comments per issue: 0.97
- Average comments per pull request: 0.5
- Merged pull requests: 30
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- shntnu (21)
- cells2numbers (3)
- mrohban (2)
- brodriguez78 (1)
- MarziehHaghighi (1)
- eoziolor (1)
Pull Request Authors
- shntnu (27)
- mrohban (7)
- cells2numbers (1)
- dlogan (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- R >= 3.3.0 depends
- RSQLite >= 1.0.0 suggests
- SNFtool >= 2.2 suggests
- caret >= 6.0 suggests
- cytominer >= 0.2.1 suggests
- dbplyr >= 1.1.0 suggests
- doParallel >= 1.0.10 suggests
- dplyr >= 0.7.2 suggests
- e1071 >= 1.6 suggests
- foreach >= 1.4.3 suggests
- ggplot2 >= 2.1.0 suggests
- hexbin >= 1.27.1 suggests
- knitr >= 1.17 suggests
- lazyeval >= 0.2.0 suggests
- magrittr >= 1.5 suggests
- outliers >= 0.14 suggests
- purrr >= 0.2.2 suggests
- rbenchmark >= 1.0.0 suggests
- readr >= 1.1.1 suggests
- rmarkdown >= 1.6 suggests
- robustbase >= 0.92 suggests
- stringr >= 1.1.0 suggests
- testthat >= 1.0.2 suggests
- tibble >= 1.3.4 suggests
- tidyr >= 0.7.1 suggests
- tsne >= 0.1 suggests