Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/cytomining/cytoplot

[Deprecated] Package for visualizing high-dimensional single-cell data

https://github.com/cytomining/cytoplot

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.0%) to scientific vocabulary

Keywords

microscopy profiling
Last synced: 5 months ago · JSON representation

Repository

[Deprecated] Package for visualizing high-dimensional single-cell data

Basic Info
  • Host: GitHub
  • Owner: cytomining
  • License: other
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 1.91 MB
Statistics
  • Stars: 4
  • Watchers: 1
  • Forks: 2
  • Open Issues: 5
  • Releases: 0
Archived
Topics
microscopy profiling
Created over 9 years ago · Last pushed over 1 year ago
Metadata Files
Readme License

README.md

This package is deprecated and will no longer be supported. Please use at your own risk!

Travis-CI Build Status

cytoplot

Package for visualizing high-dimensional single-cell data

Installation

You may need to install some libraries:

OSX: brew install fftw libtiff

Ubuntu:

sudo apt-get install -y libfftw3-dev libtiff5 libtiff5-dev

Install the package:

```R install.packages("devtools")

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install(version = "3.10")

devtools::installgithub("cytomining/cytoplot", dependencies = TRUE, buildvignettes = TRUE, repos = BiocInstaller::biocinstallRepos()) ```

You may need to do run that again in order to build the vignettes correctly (seems like a bug in install_github): R devtools::install_github("cytomining/cytoplot", dependencies = TRUE, build_vignettes = TRUE, force = TRUE, repos = BiocInstaller::biocinstallRepos())

Owner

  • Name: cytomining
  • Login: cytomining
  • Kind: organization

GitHub Events

Total
Last Year

Dependencies

DESCRIPTION cran
  • R >= 3.6.0 depends
  • EBImage >= 4.28.1 imports
  • dplyr >= 0.5.0 imports
  • futile.logger >= 1.4.3 imports
  • lazyeval >= 0.2.0 imports
  • magrittr >= 1.5 imports
  • purrr >= 0.2.2 imports
  • readr >= 1.0.0 imports
  • stringr >= 1.1.0 imports
  • tibble >= 1.2 imports
  • tidyr >= 0.6.0 imports
  • knitr >= 1.14 suggests
  • rmarkdown >= 1.0 suggests
  • testthat >= 1.0.2 suggests