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Open Source Science

https://github.com/cytoscape/cytoscape-gui-distribution

Cytoscape 3 desktop version.

https://github.com/cytoscape/cytoscape-gui-distribution

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    10 of 41 committers (24.4%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.7%) to scientific vocabulary

Keywords from Contributors

cytoscape systems-biology cytoscape-interfaces py2cytoscape workflow-automation network-analysis network-biology identifier-mapping bioinformatics
Last synced: 10 months ago · JSON representation

Repository

Cytoscape 3 desktop version.

Basic Info
  • Host: GitHub
  • Owner: cytoscape
  • Language: Java
  • Default Branch: develop
  • Size: 87.5 MB
Statistics
  • Stars: 17
  • Watchers: 20
  • Forks: 18
  • Open Issues: 3
  • Releases: 4
Created over 13 years ago · Last pushed 12 months ago
Metadata Files
Readme

README.md

Cytoscape Desktop Release Protocol

https://github.com/cytoscape/cytoscape#readme

Owner

  • Name: Cytoscape Consortium
  • Login: cytoscape
  • Kind: organization

GitHub Events

Total
  • Watch event: 1
  • Push event: 5
  • Create event: 1
Last Year
  • Watch event: 1
  • Push event: 5
  • Create event: 1

Committers

Last synced: 11 months ago

All Time
  • Total Commits: 823
  • Total Committers: 41
  • Avg Commits per committer: 20.073
  • Development Distribution Score (DDS): 0.88
Past Year
  • Commits: 7
  • Committers: 4
  • Avg Commits per committer: 1.75
  • Development Distribution Score (DDS): 0.714
Top Committers
Name Email Commits
D d****v@g****m 99
mes m****s@0****5 84
kono k****o@0****5 76
Tim Hull t****l@u****u 66
Scooter Morris s****r@c****u 57
Mike Kucera m****a@g****m 53
jm jm@0****5 53
Keiichiro Ono k****o@g****m 47
Yihang Xin 4****x 36
Christian Lopes c****s@g****m 35
Brett Settle b****e@g****m 30
Alexander Pico a****o@g****u 25
Barry Demchak i****k@g****m 24
Jason Montojo j****z@g****m 19
ruschein r****n@0****5 14
scooter s****r@0****5 13
rodche r****e@0****5 12
Chris Churas c****a@g****m 9
rozagh r****h@0****5 7
jingjingbic j****c@g****m 6
slotia s****a@0****5 5
clopes c****s@0****5 5
Samad Lotia s****a@g****u 5
Adam Treister a****r@g****m 5
Peng-Liang Wang p****7@g****m 5
Christian Lopes C****s@0****5 4
bdemchak b****k@0****5 4
AdamStuart a****r@g****u 4
David d****r@g****m 4
pwang p****g@0****5 3
and 11 more...
Committer Domains (Top 20 + Academic)
gladstone.ucsf.edu: 5 ucsd.edu: 2 utoronto.ca: 1 eng.ucsd.edu: 1 cgl.ucsf.edu: 1

Issues and Pull Requests

Last synced: 11 months ago

Dependencies

assembly/pom.xml maven
  • org.apache.karaf.features:standard ${karaf.version}
  • org.apache.karaf:apache-karaf ${karaf.version}
cmdline-impl/pom.xml maven
  • org.cytoscape.distribution:karaf-launcher 3.10.0-SNAPSHOT
  • org.cytoscape:cmdline ${cytoscape.support.version}
  • org.cytoscape:service-api ${cytoscape.api.version}
  • org.osgi:osgi.core ${osgi.api.version}
diagnostics/pom.xml maven
  • org.cytoscape.distribution:karaf-launcher 3.10.0-SNAPSHOT
  • org.osgi:osgi.core ${osgi.api.version}
integration-test/pom.xml maven
  • ch.qos.logback:logback-classic 0.9.29 test
  • ch.qos.logback:logback-core 0.9.29 test
  • javax.inject:javax.inject 1 test
  • junit:junit 4.11 test
  • org.apache.karaf:apache-karaf ${karaf.version} test
  • org.cytoscape:application-api ${cytoscape.api.version} test
  • org.cytoscape:application-impl ${cytoscape.impl.version} test
  • org.cytoscape:core-task-impl ${cytoscape.impl.version} test
  • org.cytoscape:datasource-impl ${cytoscape.impl.version} test
  • org.cytoscape:ding-presentation-impl ${cytoscape.impl.version} test
  • org.cytoscape:equations-impl ${cytoscape.impl.version} test
  • org.cytoscape:event-impl ${cytoscape.impl.version} test
  • org.cytoscape:group-api ${cytoscape.api.version} test
  • org.cytoscape:group-impl ${cytoscape.impl.version} test
  • org.cytoscape:io-impl ${cytoscape.impl.version} test
  • org.cytoscape:jobs-api ${cytoscape.api.version} test
  • org.cytoscape:layout-impl ${cytoscape.impl.version} test
  • org.cytoscape:model-api ${cytoscape.api.version} test
  • org.cytoscape:model-impl ${cytoscape.impl.version} test
  • org.cytoscape:presentation-api ${cytoscape.api.version} test
  • org.cytoscape:presentation-impl ${cytoscape.impl.version} test
  • org.cytoscape:property-api ${cytoscape.api.version} test
  • org.cytoscape:property-impl ${cytoscape.impl.version} test
  • org.cytoscape:session-api ${cytoscape.api.version} test
  • org.cytoscape:session-impl ${cytoscape.impl.version} test
  • org.cytoscape:util-impl ${cytoscape.impl.version} test
  • org.cytoscape:viewmodel-impl ${cytoscape.impl.version} test
  • org.cytoscape:vizmap-gui-impl ${cytoscape.impl.version} test
  • org.cytoscape:vizmap-impl ${cytoscape.impl.version} test
  • org.cytoscape:work-api ${cytoscape.api.version} test
  • org.cytoscape:work-headless-impl ${cytoscape.impl.version} test
  • org.cytoscape:work-impl ${cytoscape.impl.version} test
  • org.cytoscape:work-swing-impl ${cytoscape.impl.version} test
  • org.mockito:mockito-core ${mockito.version} test
  • org.ops4j.base:ops4j-base-exec 1.4.0 test
  • org.ops4j.pax.exam:pax-exam 4.13.1 test
  • org.ops4j.pax.exam:pax-exam-container-karaf 4.13.1 test
  • org.ops4j.pax.exam:pax-exam-extender-service 4.13.1 test
  • org.ops4j.pax.exam:pax-exam-invoker-junit 4.13.1 test
  • org.ops4j.pax.exam:pax-exam-junit4 4.13.1 test
  • org.ops4j.pax.exam:pax-exam-link-mvn 4.13.1 test
  • org.ops4j.pax.tipi:org.ops4j.pax.tipi.junit 4.11.0.1 test
  • org.ops4j.pax.url:pax-url-aether 2.6.1 test
launcher/pom.xml maven
  • com.apple.developer:AppleJavaExtensions 1.6 compile
  • guru.nidi.com.kitfox:svgSalamander 1.1.3 compile
  • org.apache.karaf:org.apache.karaf.main ${karaf.version}
packaging/pom.xml maven
  • org.cytoscape.distribution:cytoscape 3.10.0-SNAPSHOT
splash-launcher/pom.xml maven
  • org.cytoscape:launcher ${cytoscape.support.version}
splash-updater-impl/pom.xml maven
  • org.cytoscape.distribution:karaf-launcher 3.10.0-SNAPSHOT provided
  • org.cytoscape:app-api ${cytoscape.api.version} provided
  • org.osgi:osgi.cmpn ${osgi.compendium.version} provided
  • org.osgi:osgi.core ${osgi.api.version} provided
third-party/pom.xml maven
  • com.fasterxml.jackson.core:jackson-annotations 2.2.2
  • com.fasterxml.jackson.core:jackson-core 2.2.2
  • com.fasterxml.jackson.core:jackson-databind 2.2.2
  • com.google.guava:guava 22.0
  • com.lowagie:itext 2.0.8
  • commons-cli:commons-cli 1.2
  • commons-codec:commons-codec 1.5
  • commons-collections:commons-collections 3.2.1
  • commons-lang:commons-lang 2.4
  • cytoscape-sun:jhall 1.0
  • cytoscape-temp:collections-generic 4.01
  • cytoscape-temp:jfree-jcommon 1.0.15
  • cytoscape-temp:jfree-jfreechart 1.0.13
  • cytoscape-temp:jigsaw 2.2.6
  • cytoscape-temp:l2fprod-common-fontchooser 7.3
  • cytoscape-temp:l2fprod-common-shared 7.3
  • cytoscape-temp:l2fprod-common-sheet 7.3
  • cytoscape-temp:org.swinglabs.swingx 1.6.1
  • cytoscape-temp:parallelcolt 0.9.4
  • cytoscape-temp:stax2-api 3.0.1
  • cytoscape-temp:staxmate 2.0.0
  • cytoscape-temp:violinstrings 1.0.2
  • cytoscape-temp:woodstox-core-lgpl 4.0.5
  • cytoscape-temp:xstream 1.3.1
  • dom4j:dom4j 1.6.1
  • guru.nidi.com.kitfox:svgSalamander 1.1.3
  • net.sf.opencsv:opencsv 2.1
  • org.apache.httpcomponents:httpclient 4.5.13
  • org.apache.httpcomponents:httpcore 4.4.15
  • org.freehep:freehep-graphics2d 2.4
  • org.freehep:freehep-graphicsbase 2.4
  • org.freehep:freehep-graphicsio 2.4
  • org.freehep:freehep-graphicsio-java 2.4
  • org.freehep:freehep-graphicsio-pdf 2.4
  • org.freehep:freehep-graphicsio-ps 2.4
  • org.freehep:freehep-graphicsio-svg 2.4
  • org.freehep:freehep-io 2.2.2
  • org.json:org.json chargebee-1.0
  • org.puremvc:PureMVC_Java_MultiCore 1.0.7
  • org.swinglabs:swing-layout 1.0.3
  • psidev.psi.mi:psi25-xml 1.8.6