https://github.com/cytoscape/cyrest

Core App: REST API module for Cytoscape

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
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Academic publication links
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Committers with academic emails
5 of 17 committers (29.4%) from academic institutions
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (14.3%) to scientific vocabulary

Keywords from Contributors

cytoscape network-analysis network-biology systems-biology identifier-mapping cytoscape-interfaces py2cytoscape workflow-automation cytoscapejs graph-theory

Last synced: 10 months ago · JSON representation

Repository

Core App: REST API module for Cytoscape

Basic Info

Host: GitHub
Owner: cytoscape
License: mit
Language: JavaScript
Default Branch: develop
Homepage: https://github.com/cytoscape/cyREST/wiki
Size: 7.03 MB

Statistics

Stars: 31
Watchers: 20
Forks: 13
Open Issues: 50
Releases: 4

Created almost 11 years ago · Last pushed 12 months ago

Metadata Files

Readme License

README.md

cyREST

Language-agnostic RESTful API for Cytoscape

Citation

We need your support to make this project sustainable. Please cite the following paper when you use cyREST in your projects:

Ono, Keiichiro, et al. CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API. F1000Research 4 (2015).

Introduction

Important: Now cyREST is a Core App

From Cytoscape 3.3.0, cyREST is a Core App:

You don't have to install cyREST manually. It is a part of core distribution
Although it is part of core distribution, you will get updates after 3.3.0 release

What is cyREST?

An app to control Cytoscape from RStudio, Jupyter Notebook, Node.js or other programming languages.

System Requirements

Documentation

CyREST API docs are available within Cytoscape main menu through the Help → Automation sub-menu.
cyREST Wiki

For Developers and Maintainers

Build instructions and notes are included in the Developers Guide

Problems or Feature Requests?

Please send your feature requests to our mailing list.

Please report the problems to our issue tracker:

cyREST Issue Tracker

And of course, pull requests are always welcome!

License

Source Code: The MIT license
Documentation: CC BY-SA 4.0

Developed and maintained by Keiichiro Ono, UCSD Trey Ideker Lab.

Note to repository maintainers: Please *DO NOT* move this page ... the Cytoscape Automation paper refers directly to it.

Owner

Name: Cytoscape Consortium
Login: cytoscape
Kind: organization

Website: http://www.cytoscape.org/
Repositories: 153
Profile: https://github.com/cytoscape

GitHub Events

Total

Issues event: 1
Watch event: 1
Push event: 2
Pull request review comment event: 2
Pull request review event: 3
Pull request event: 1
Fork event: 1
Create event: 1

Last Year

Issues event: 1
Watch event: 1
Push event: 2
Pull request review comment event: 2
Pull request review event: 3
Pull request event: 1
Fork event: 1
Create event: 1

Committers

Last synced: 11 months ago

All Time

Total Commits: 580
Total Committers: 17
Avg Commits per committer: 34.118
Development Distribution Score (DDS): 0.522

Past Year

Commits: 3
Committers: 2
Avg Commits per committer: 1.5
Development Distribution Score (DDS): 0.333

Top Committers

Name	Email	Commits
Unknown	d**v@g**m	277
Keiichiro Ono	k**o@g**m	241
Mike Kucera	m**a@g**m	18
mckgamer	m**r@y**m	14
jingjingbic	j**c@g**m	7
Tim Hull	t**l@u**u	5
Chris Churas	c**a@g**m	3
Alexander Pico	a**o@g**u	3
Christian Lopes	c**s@g**m	2
Yihang Xin	y**n@g**u	2
kono	k**o@m**l	2
jingchen	j**n@j**m	1
jingchen	j**n@1**5	1
Keiichiro Ono	k**o@5**l	1
Camboulives	c**i@e**r	1
Adam Treister	a**r@g**u	1
Barry Demchak	b**k@u**u	1

Committer Domains (Top 20 + Academic)

gladstone.ucsf.edu: 3 ucsd.edu: 2 ece.fr: 1 100.82.85.115: 1 jings-mbp.san.rr.com: 1

Issues and Pull Requests