https://github.com/cytoscape/cy-jupyterlab
Jupyter lab widget for rendering graphs (networks)
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.0%) to scientific vocabulary
Repository
Jupyter lab widget for rendering graphs (networks)
Basic Info
- Host: GitHub
- Owner: cytoscape
- Language: Jupyter Notebook
- Default Branch: master
- Size: 1.64 MB
Statistics
- Stars: 24
- Watchers: 5
- Forks: 4
- Open Issues: 7
- Releases: 0
Metadata Files
README.md
cy-jupyterlab
A Jupyter Lab extension for interactive graph (network) data visualization
Introduction
Cy-JupyterLab is a Jupyter Lab extension for interactive graph visualization. Current version supports the following data types:
- Cytoscape eXchange format (.cx)
- Cytoscape.js JSON (.cyjs)
Features
- Interactive network visualization in Panels.
- Supports visualization in Jupyter Notebook cells
- Full support for Cytoscape.js compatible styles
- Support for data from NDEx) database.
- Automatic layouts
Requirments
- JupyterLab - Tested on v3.4
Optional
- ndex2 - this is a python library to import data from NDEx. If you want to use NDEx data sets, this provides high-level API to access the data
Installation
v0.1.0
bash
jupyter labextension install @iau/cy-jupyterlab
v0.5.0 and later (Not released yet)
bash
jupyter labextension install cy-jupyterlab
For Developers
To build the extension from the source, please do the following in the cloned directory:
bash
jlpm install
jlpm build
jupyter labextension link .
To rebuild the package and the JupyterLab app:
bash
jlpm build
jupyter lab build
Acknoowledgment
The prototype was developed by the following students as a summer project 2018:
- Hideki Akazawa (University of Osaka, Japan)
- Kaito Uemura (University of Osaka, Japan)
© 2022 University of California, San Diego
Owner
- Name: Cytoscape Consortium
- Login: cytoscape
- Kind: organization
- Website: http://www.cytoscape.org/
- Repositories: 153
- Profile: https://github.com/cytoscape
GitHub Events
Total
Last Year
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| tmsah | h****0@g****m | 22 |
| Keiichiro Ono | k****o@g****m | 13 |
| kaito | k****o@k****l | 11 |
| jingjingbic | j****c@g****m | 10 |
| kaito | k****o@k****t | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 12 months ago
All Time
- Total issues: 10
- Total pull requests: 4
- Average time to close issues: N/A
- Average time to close pull requests: less than a minute
- Total issue authors: 5
- Total pull request authors: 1
- Average comments per issue: 0.7
- Average comments per pull request: 0.0
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- tmtabor (2)
- Kaiton7 (2)
- drmeister (1)
- anki-code (1)
- lisp (1)
Pull Request Authors
- jingjingbic (2)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- npm 2 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 1
- Total maintainers: 1
npmjs.org: @g2nb/cy-jupyterlab
JupyterLab extension for graph (network) visualization.
- Homepage: https://github.com/cytoscape/cy-jupyterlab#readme
- License: MIT
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Latest release: 0.7.0
published about 3 years ago