https://github.com/czbiohub-sf/xicor
xi correlation method adapted for python
Science Score: 10.0%
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Links to: arxiv.org -
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○Scientific vocabulary similarity
Low similarity (8.9%) to scientific vocabulary
Repository
xi correlation method adapted for python
Basic Info
- Host: GitHub
- Owner: czbiohub-sf
- License: mit
- Language: Jupyter Notebook
- Default Branch: master
- Size: 555 KB
Statistics
- Stars: 150
- Watchers: 9
- Forks: 17
- Open Issues: 8
- Releases: 0
Metadata Files
README.md
xicor
xi correlation method adapted for python
What is xicor?
xicor is an implementation of the "xi" correlation metric described in Chatterjee, S. (2019, September 22). A new coefficient of correlation. arxiv.org/abs/1909.10140. It is based off the R code mentioned in the paper: https://statweb.stanford.edu/~souravc/xi.R
- Free software: MIT license
- Documentation: https://czbiohub.github.io/xicor
Installation
The package can be installed from PyPI using pip here:
pip install xicor
Developmental install
To install this code and play around with the code locally, clone this github repository and use pip to install:
``` git clone https://github.com/czbiohub/xicor.git cd xicor
The "." means "install this, the folder where I am now"
pip install .
or you could install using
python setup.py install ```
Usage
``` from xicor.xicor import Xi xiobj = Xi([1, 2, 3], [1, 2, 3]) correlation = xiobj.correlation pvals = xiobj.pvalasymptotic(ties=False, nperm=1000)
```
Owner
- Name: Chan Zuckerberg Biohub San Francisco
- Login: czbiohub-sf
- Kind: organization
- Location: San Francisco
- Website: https://www.czbiohub.org/sf/
- Repositories: 1
- Profile: https://github.com/czbiohub-sf
GitHub Events
Total
- Watch event: 3
Last Year
- Watch event: 3
Dependencies
- ipykernel
- numpy
- pandas
- pytest-cov
- scipy
- seaborn
- black *
- numpy *
- pytest *
- pytest-cov *
- scipy >=1.4.1